Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PPP4R4Q6NUP7 KRT18P1-202ENST00000452408 1331 ntBASIC16.31■□□□□ 0.2
PPP4R4Q6NUP7 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC16.31■□□□□ 0.2
PPP4R4Q6NUP7 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC16.31■□□□□ 0.2
PPP4R4Q6NUP7 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PPP4R4Q6NUP7 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PPP4R4Q6NUP7 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PPP4R4Q6NUP7 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PPP4R4Q6NUP7 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
PPP4R4Q6NUP7 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PPP4R4Q6NUP7 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC16.31■□□□□ 0.2
PPP4R4Q6NUP7 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PPP4R4Q6NUP7 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PPP4R4Q6NUP7 TSSC2-201ENST00000450217 709 ntBASIC16.31■□□□□ 0.2
PPP4R4Q6NUP7 PPOX-214ENST00000535223 664 ntTSL 3 BASIC16.31■□□□□ 0.2
PPP4R4Q6NUP7 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PPP4R4Q6NUP7 AC008687.5-201ENST00000593746 558 ntBASIC16.31■□□□□ 0.2
PPP4R4Q6NUP7 AC092119.3-201ENST00000612618 583 ntBASIC16.31■□□□□ 0.2
PPP4R4Q6NUP7 IGHV3-41-201ENST00000613121 348 ntBASIC16.31■□□□□ 0.2
PPP4R4Q6NUP7 BCL10-202ENST00000620248 774 ntTSL 5 BASIC16.31■□□□□ 0.2
PPP4R4Q6NUP7 WDR6-223ENST00000627177 207 ntTSL 2 BASIC16.31■□□□□ 0.2
PPP4R4Q6NUP7 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC16.31■□□□□ 0.2
PPP4R4Q6NUP7 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
PPP4R4Q6NUP7 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
PPP4R4Q6NUP7 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PPP4R4Q6NUP7 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC16.31■□□□□ 0.2
PPP4R4Q6NUP7 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PPP4R4Q6NUP7 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
PPP4R4Q6NUP7 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
PPP4R4Q6NUP7 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PPP4R4Q6NUP7 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC16.31■□□□□ 0.2
PPP4R4Q6NUP7 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PPP4R4Q6NUP7 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PPP4R4Q6NUP7 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
PPP4R4Q6NUP7 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 BAALC-202ENST00000306391 243 ntTSL 5 BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 BAALC-204ENST00000330955 222 ntTSL 5 BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 AC004263.2-201ENST00000617183 678 ntBASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 MYB-242ENST00000618728 3545 ntTSL 5 BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 AC063926.3-201ENST00000624734 5658 ntBASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
PPP4R4Q6NUP7 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PPP4R4Q6NUP7 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PPP4R4Q6NUP7 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
PPP4R4Q6NUP7 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PPP4R4Q6NUP7 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PPP4R4Q6NUP7 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PPP4R4Q6NUP7 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PPP4R4Q6NUP7 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PPP4R4Q6NUP7 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
PPP4R4Q6NUP7 AC093525.9-201ENST00000624961 1746 ntBASIC16.29■□□□□ 0.2
PPP4R4Q6NUP7 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
PPP4R4Q6NUP7 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms