Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIG3P49916 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIG3P49916 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIG3P49916 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.89■□□□□ 0.45
LIG3P49916 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIG3P49916 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIG3P49916 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIG3P49916 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIG3P49916 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC17.89■□□□□ 0.45
LIG3P49916 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.89■□□□□ 0.45
LIG3P49916 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC17.89■□□□□ 0.45
LIG3P49916 CCS-201ENST00000310190 942 ntTSL 5 BASIC17.89■□□□□ 0.45
LIG3P49916 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LIG3P49916 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIG3P49916 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LIG3P49916 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC17.89■□□□□ 0.45
LIG3P49916 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC17.89■□□□□ 0.45
LIG3P49916 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC17.89■□□□□ 0.45
LIG3P49916 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC17.89■□□□□ 0.45
LIG3P49916 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LIG3P49916 TPM1-218ENST00000559281 851 ntTSL 5 BASIC17.89■□□□□ 0.45
LIG3P49916 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC17.89■□□□□ 0.45
LIG3P49916 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC17.89■□□□□ 0.45
LIG3P49916 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIG3P49916 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
LIG3P49916 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LIG3P49916 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIG3P49916 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
LIG3P49916 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIG3P49916 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC17.89■□□□□ 0.45
LIG3P49916 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIG3P49916 AC022898.2-201ENST00000616822 1312 ntBASIC17.89■□□□□ 0.45
LIG3P49916 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIG3P49916 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIG3P49916 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC17.89■□□□□ 0.45
LIG3P49916 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LIG3P49916 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
LIG3P49916 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LIG3P49916 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LIG3P49916 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LIG3P49916 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIG3P49916 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIG3P49916 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIG3P49916 TP73-AS1-210ENST00000637775 1455 ntBASIC17.88■□□□□ 0.45
LIG3P49916 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
LIG3P49916 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC17.88■□□□□ 0.45
LIG3P49916 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC17.88■□□□□ 0.45
LIG3P49916 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LIG3P49916 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LIG3P49916 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LIG3P49916 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LIG3P49916 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LIG3P49916 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LIG3P49916 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LIG3P49916 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC17.88■□□□□ 0.45
LIG3P49916 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
LIG3P49916 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LIG3P49916 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC17.88■□□□□ 0.45
LIG3P49916 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LIG3P49916 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC17.88■□□□□ 0.45
LIG3P49916 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LIG3P49916 AC006449.5-201ENST00000610658 2098 ntBASIC17.88■□□□□ 0.45
LIG3P49916 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LIG3P49916 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
LIG3P49916 AC022188.1-201ENST00000620960 1664 ntBASIC17.88■□□□□ 0.45
LIG3P49916 DFFB-203ENST00000341385 572 ntTSL 5 BASIC17.88■□□□□ 0.45
LIG3P49916 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LIG3P49916 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC17.88■□□□□ 0.45
LIG3P49916 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
LIG3P49916 MEG3-211ENST00000452514 461 ntTSL 3 BASIC17.88■□□□□ 0.45
LIG3P49916 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LIG3P49916 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC17.88■□□□□ 0.45
LIG3P49916 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LIG3P49916 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LIG3P49916 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
LIG3P49916 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LIG3P49916 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
LIG3P49916 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
LIG3P49916 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
LIG3P49916 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LIG3P49916 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
LIG3P49916 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
LIG3P49916 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
LIG3P49916 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LIG3P49916 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC17.88■□□□□ 0.45
LIG3P49916 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
LIG3P49916 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
LIG3P49916 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
LIG3P49916 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC17.87■□□□□ 0.45
LIG3P49916 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC17.87■□□□□ 0.45
LIG3P49916 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
LIG3P49916 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LIG3P49916 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC17.87■□□□□ 0.45
LIG3P49916 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LIG3P49916 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LIG3P49916 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC17.87■□□□□ 0.45
LIG3P49916 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LIG3P49916 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC17.87■□□□□ 0.45
LIG3P49916 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC17.87■□□□□ 0.45
LIG3P49916 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms