Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
CTCFP49711 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
CTCFP49711 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CTCFP49711 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC19.52■□□□□ 0.72
CTCFP49711 AL035456.1-201ENST00000456064 1369 ntBASIC19.52■□□□□ 0.72
CTCFP49711 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
CTCFP49711 GMCL1P1-201ENST00000463439 1581 ntBASIC19.52■□□□□ 0.71
CTCFP49711 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
CTCFP49711 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC19.52■□□□□ 0.71
CTCFP49711 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
CTCFP49711 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC19.52■□□□□ 0.71
CTCFP49711 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CTCFP49711 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC19.51■□□□□ 0.71
CTCFP49711 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC19.51■□□□□ 0.71
CTCFP49711 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CTCFP49711 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CTCFP49711 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC19.51■□□□□ 0.71
CTCFP49711 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CTCFP49711 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CTCFP49711 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CTCFP49711 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CTCFP49711 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CTCFP49711 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CTCFP49711 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
CTCFP49711 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC19.51■□□□□ 0.71
CTCFP49711 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC19.51■□□□□ 0.71
CTCFP49711 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CTCFP49711 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC19.51■□□□□ 0.71
CTCFP49711 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CTCFP49711 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC19.51■□□□□ 0.71
CTCFP49711 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC19.51■□□□□ 0.71
CTCFP49711 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC19.51■□□□□ 0.71
CTCFP49711 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC19.51■□□□□ 0.71
CTCFP49711 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC19.51■□□□□ 0.71
CTCFP49711 NKG7-205ENST00000600427 520 ntTSL 3 BASIC19.51■□□□□ 0.71
CTCFP49711 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC19.51■□□□□ 0.71
CTCFP49711 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CTCFP49711 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC19.51■□□□□ 0.71
CTCFP49711 CETN4P-206ENST00000642099 2168 ntBASIC19.51■□□□□ 0.71
CTCFP49711 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CTCFP49711 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CTCFP49711 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CTCFP49711 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CTCFP49711 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC19.51■□□□□ 0.71
CTCFP49711 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC19.51■□□□□ 0.71
CTCFP49711 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC19.51■□□□□ 0.71
CTCFP49711 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
CTCFP49711 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CTCFP49711 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC19.51■□□□□ 0.71
CTCFP49711 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CTCFP49711 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CTCFP49711 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
CTCFP49711 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CTCFP49711 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC19.5■□□□□ 0.71
CTCFP49711 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CTCFP49711 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CTCFP49711 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC19.5■□□□□ 0.71
CTCFP49711 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC19.5■□□□□ 0.71
CTCFP49711 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC19.5■□□□□ 0.71
CTCFP49711 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
CTCFP49711 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CTCFP49711 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC19.5■□□□□ 0.71
CTCFP49711 SLC7A15P-201ENST00000424028 1363 ntBASIC19.5■□□□□ 0.71
CTCFP49711 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CTCFP49711 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CTCFP49711 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CTCFP49711 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC19.5■□□□□ 0.71
CTCFP49711 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC19.5■□□□□ 0.71
CTCFP49711 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CTCFP49711 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC19.5■□□□□ 0.71
CTCFP49711 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC19.5■□□□□ 0.71
CTCFP49711 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
CTCFP49711 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC19.5■□□□□ 0.71
CTCFP49711 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
CTCFP49711 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CTCFP49711 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC19.5■□□□□ 0.71
CTCFP49711 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CTCFP49711 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CTCFP49711 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CTCFP49711 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
CTCFP49711 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CTCFP49711 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CTCFP49711 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC19.5■□□□□ 0.71
CTCFP49711 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CTCFP49711 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CTCFP49711 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC19.49■□□□□ 0.71
CTCFP49711 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
CTCFP49711 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
CTCFP49711 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CTCFP49711 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CTCFP49711 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CTCFP49711 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
CTCFP49711 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CTCFP49711 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CTCFP49711 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
CTCFP49711 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CTCFP49711 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
CTCFP49711 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CTCFP49711 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC19.49■□□□□ 0.71
CTCFP49711 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms