Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HLA-DMBP28068 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
HLA-DMBP28068 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
HLA-DMBP28068 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HLA-DMBP28068 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC12.97□□□□□ -0.33
HLA-DMBP28068 GPR89P-201ENST00000407924 1495 ntBASIC12.97□□□□□ -0.33
HLA-DMBP28068 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HLA-DMBP28068 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC12.97□□□□□ -0.33
HLA-DMBP28068 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HLA-DMBP28068 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HLA-DMBP28068 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
HLA-DMBP28068 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
HLA-DMBP28068 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
HLA-DMBP28068 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC12.96□□□□□ -0.33
HLA-DMBP28068 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
HLA-DMBP28068 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
HLA-DMBP28068 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
HLA-DMBP28068 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC12.96□□□□□ -0.33
HLA-DMBP28068 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
HLA-DMBP28068 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
HLA-DMBP28068 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC12.96□□□□□ -0.33
HLA-DMBP28068 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
HLA-DMBP28068 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
HLA-DMBP28068 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
HLA-DMBP28068 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC12.96□□□□□ -0.33
HLA-DMBP28068 LTF-203ENST00000426532 2494 ntTSL 2 BASIC12.96□□□□□ -0.33
HLA-DMBP28068 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
HLA-DMBP28068 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
HLA-DMBP28068 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
HLA-DMBP28068 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
HLA-DMBP28068 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
HLA-DMBP28068 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
HLA-DMBP28068 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
HLA-DMBP28068 TPM4P1-201ENST00000436100 807 ntBASIC12.96□□□□□ -0.33
HLA-DMBP28068 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC12.96□□□□□ -0.33
HLA-DMBP28068 AC104819.1-201ENST00000504587 486 ntBASIC12.96□□□□□ -0.33
HLA-DMBP28068 PNN-202ENST00000553331 656 ntTSL 3 BASIC12.96□□□□□ -0.33
HLA-DMBP28068 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC12.96□□□□□ -0.33
HLA-DMBP28068 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
HLA-DMBP28068 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
HLA-DMBP28068 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
HLA-DMBP28068 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
HLA-DMBP28068 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC12.96□□□□□ -0.33
HLA-DMBP28068 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC12.96□□□□□ -0.33
HLA-DMBP28068 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC12.96□□□□□ -0.33
HLA-DMBP28068 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
HLA-DMBP28068 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
HLA-DMBP28068 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
HLA-DMBP28068 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC12.96□□□□□ -0.34
HLA-DMBP28068 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
HLA-DMBP28068 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.34
HLA-DMBP28068 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC12.96□□□□□ -0.34
HLA-DMBP28068 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
HLA-DMBP28068 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
HLA-DMBP28068 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.34
HLA-DMBP28068 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
HLA-DMBP28068 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.34
HLA-DMBP28068 INTS4P1-201ENST00000438455 1935 ntBASIC12.96□□□□□ -0.34
HLA-DMBP28068 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
HLA-DMBP28068 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC12.96□□□□□ -0.34
HLA-DMBP28068 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC12.96□□□□□ -0.34
HLA-DMBP28068 AC092364.2-201ENST00000596710 2692 ntBASIC12.96□□□□□ -0.34
HLA-DMBP28068 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DMBP28068 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DMBP28068 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DMBP28068 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
HLA-DMBP28068 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
HLA-DMBP28068 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DMBP28068 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DMBP28068 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC12.95□□□□□ -0.34
HLA-DMBP28068 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DMBP28068 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC12.95□□□□□ -0.34
HLA-DMBP28068 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DMBP28068 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DMBP28068 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DMBP28068 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DMBP28068 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
HLA-DMBP28068 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DMBP28068 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DMBP28068 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC12.95□□□□□ -0.34
HLA-DMBP28068 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC12.95□□□□□ -0.34
HLA-DMBP28068 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DMBP28068 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DMBP28068 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
HLA-DMBP28068 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DMBP28068 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DMBP28068 FUOM-202ENST00000368551 628 ntTSL 3 BASIC12.95□□□□□ -0.34
HLA-DMBP28068 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DMBP28068 CD9-202ENST00000382515 1229 ntTSL 5 BASIC12.95□□□□□ -0.34
HLA-DMBP28068 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC12.95□□□□□ -0.34
HLA-DMBP28068 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DMBP28068 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC12.95□□□□□ -0.34
HLA-DMBP28068 DANCR-204ENST00000444958 709 ntTSL 3 BASIC12.95□□□□□ -0.34
HLA-DMBP28068 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
HLA-DMBP28068 KRT17P6-201ENST00000453795 1220 ntBASIC12.95□□□□□ -0.34
HLA-DMBP28068 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DMBP28068 MPI-205ENST00000562606 1052 ntTSL 3 BASIC12.95□□□□□ -0.34
HLA-DMBP28068 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC12.95□□□□□ -0.34
HLA-DMBP28068 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DMBP28068 Z69720.1-201ENST00000601483 472 ntBASIC12.95□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms