Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL6A2P12110 IER3-202ENST00000376377 1350 ntBASIC16.77■□□□□ 0.28
COL6A2P12110 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL6A2P12110 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL6A2P12110 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL6A2P12110 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.77■□□□□ 0.28
COL6A2P12110 ME2P1-201ENST00000426028 1970 ntBASIC16.77■□□□□ 0.28
COL6A2P12110 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL6A2P12110 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
COL6A2P12110 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC16.77■□□□□ 0.28
COL6A2P12110 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL6A2P12110 PC-204ENST00000524491 1714 ntTSL 2 BASIC16.77■□□□□ 0.28
COL6A2P12110 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL6A2P12110 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL6A2P12110 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
COL6A2P12110 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL6A2P12110 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
COL6A2P12110 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL6A2P12110 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.77■□□□□ 0.28
COL6A2P12110 FAM210CP-201ENST00000445714 574 ntBASIC16.77■□□□□ 0.28
COL6A2P12110 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC16.77■□□□□ 0.28
COL6A2P12110 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC16.77■□□□□ 0.28
COL6A2P12110 BET1L-206ENST00000486280 665 ntTSL 3 BASIC16.77■□□□□ 0.28
COL6A2P12110 AC012615.1-201ENST00000565797 1299 ntBASIC16.77■□□□□ 0.28
COL6A2P12110 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC16.77■□□□□ 0.28
COL6A2P12110 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
COL6A2P12110 MIR5100-201ENST00000579544 119 ntBASIC16.77■□□□□ 0.28
COL6A2P12110 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC16.77■□□□□ 0.28
COL6A2P12110 CCNC-219ENST00000627680 896 ntTSL 5 BASIC16.77■□□□□ 0.28
COL6A2P12110 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL6A2P12110 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL6A2P12110 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
COL6A2P12110 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
COL6A2P12110 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
COL6A2P12110 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
COL6A2P12110 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
COL6A2P12110 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
COL6A2P12110 CROCCP1-201ENST00000426910 5675 ntBASIC16.77■□□□□ 0.27
COL6A2P12110 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
COL6A2P12110 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
COL6A2P12110 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.77■□□□□ 0.27
COL6A2P12110 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC16.76■□□□□ 0.27
COL6A2P12110 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.76■□□□□ 0.27
COL6A2P12110 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC16.76■□□□□ 0.27
COL6A2P12110 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A2P12110 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC16.76■□□□□ 0.27
COL6A2P12110 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A2P12110 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.76■□□□□ 0.27
COL6A2P12110 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A2P12110 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A2P12110 AL590787.1-201ENST00000568856 1315 ntBASIC16.76■□□□□ 0.27
COL6A2P12110 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A2P12110 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC16.76■□□□□ 0.27
COL6A2P12110 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
COL6A2P12110 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A2P12110 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
COL6A2P12110 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A2P12110 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A2P12110 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC16.76■□□□□ 0.27
COL6A2P12110 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC16.76■□□□□ 0.27
COL6A2P12110 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A2P12110 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A2P12110 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A2P12110 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
COL6A2P12110 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A2P12110 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A2P12110 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A2P12110 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A2P12110 ISCU-203ENST00000431221 799 ntTSL 2 BASIC16.76■□□□□ 0.27
COL6A2P12110 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC16.76■□□□□ 0.27
COL6A2P12110 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC16.76■□□□□ 0.27
COL6A2P12110 MIR3180-1-201ENST00000580374 94 ntBASIC16.76■□□□□ 0.27
COL6A2P12110 CYB561-217ENST00000582997 877 ntTSL 5 BASIC16.76■□□□□ 0.27
COL6A2P12110 MIR3180-3-201ENST00000584616 94 ntBASIC16.76■□□□□ 0.27
COL6A2P12110 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC16.76■□□□□ 0.27
COL6A2P12110 AL353135.1-201ENST00000606729 504 ntBASIC16.76■□□□□ 0.27
COL6A2P12110 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC16.76■□□□□ 0.27
COL6A2P12110 ABBA01031661.1-201ENST00000634362 1253 ntBASIC16.76■□□□□ 0.27
COL6A2P12110 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC16.76■□□□□ 0.27
COL6A2P12110 AC006277.1-201ENST00000624348 1610 ntBASIC16.76■□□□□ 0.27
COL6A2P12110 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
COL6A2P12110 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A2P12110 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A2P12110 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC16.76■□□□□ 0.27
COL6A2P12110 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A2P12110 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC16.76■□□□□ 0.27
COL6A2P12110 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A2P12110 MTHFR-217ENST00000641820 1569 ntBASIC16.76■□□□□ 0.27
COL6A2P12110 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A2P12110 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A2P12110 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL6A2P12110 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC16.75■□□□□ 0.27
COL6A2P12110 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
COL6A2P12110 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
COL6A2P12110 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC16.75■□□□□ 0.27
COL6A2P12110 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL6A2P12110 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL6A2P12110 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL6A2P12110 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL6A2P12110 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms