Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC14.24□□□□□ -0.13
ABCA1O95477 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC14.24□□□□□ -0.13
ABCA1O95477 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA1O95477 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
ABCA1O95477 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC14.24□□□□□ -0.13
ABCA1O95477 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA1O95477 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA1O95477 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC14.24□□□□□ -0.13
ABCA1O95477 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
ABCA1O95477 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA1O95477 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA1O95477 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA1O95477 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA1O95477 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA1O95477 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA1O95477 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA1O95477 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC14.24□□□□□ -0.13
ABCA1O95477 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC14.24□□□□□ -0.13
ABCA1O95477 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC14.24□□□□□ -0.13
ABCA1O95477 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
ABCA1O95477 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA1O95477 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
ABCA1O95477 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC14.24□□□□□ -0.13
ABCA1O95477 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA1O95477 METTL26-204ENST00000397665 558 ntTSL 2 BASIC14.24□□□□□ -0.13
ABCA1O95477 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA1O95477 PMS2P4-201ENST00000412466 1052 ntBASIC14.24□□□□□ -0.13
ABCA1O95477 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC14.24□□□□□ -0.13
ABCA1O95477 RPL28-209ENST00000560055 670 ntTSL 3 BASIC14.24□□□□□ -0.13
ABCA1O95477 TMED1-207ENST00000591695 809 ntTSL 5 BASIC14.24□□□□□ -0.13
ABCA1O95477 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA1O95477 AL390955.2-201ENST00000603032 514 ntBASIC14.24□□□□□ -0.13
ABCA1O95477 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
ABCA1O95477 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
ABCA1O95477 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
ABCA1O95477 AC012317.2-201ENST00000623305 2251 ntBASIC14.23□□□□□ -0.13
ABCA1O95477 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
ABCA1O95477 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC14.23□□□□□ -0.13
ABCA1O95477 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
ABCA1O95477 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC14.23□□□□□ -0.13
ABCA1O95477 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
ABCA1O95477 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
ABCA1O95477 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
ABCA1O95477 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC14.23□□□□□ -0.13
ABCA1O95477 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
ABCA1O95477 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
ABCA1O95477 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC14.23□□□□□ -0.13
ABCA1O95477 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
ABCA1O95477 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC14.23□□□□□ -0.13
ABCA1O95477 REXO1L11P-201ENST00000620964 1927 ntBASIC14.23□□□□□ -0.13
ABCA1O95477 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC14.23□□□□□ -0.13
ABCA1O95477 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC14.23□□□□□ -0.13
ABCA1O95477 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
ABCA1O95477 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC14.23□□□□□ -0.13
ABCA1O95477 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC14.23□□□□□ -0.13
ABCA1O95477 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC14.23□□□□□ -0.13
ABCA1O95477 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
ABCA1O95477 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
ABCA1O95477 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
ABCA1O95477 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC14.23□□□□□ -0.13
ABCA1O95477 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
ABCA1O95477 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
ABCA1O95477 RPL30-202ENST00000396070 440 ntTSL 2 BASIC14.23□□□□□ -0.13
ABCA1O95477 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC14.23□□□□□ -0.13
ABCA1O95477 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC14.23□□□□□ -0.13
ABCA1O95477 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC14.23□□□□□ -0.13
ABCA1O95477 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC14.23□□□□□ -0.13
ABCA1O95477 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC14.23□□□□□ -0.13
ABCA1O95477 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC14.23□□□□□ -0.13
ABCA1O95477 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC14.23□□□□□ -0.13
ABCA1O95477 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
ABCA1O95477 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
ABCA1O95477 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
ABCA1O95477 BSG-215ENST00000618006 1329 ntTSL 2 BASIC14.23□□□□□ -0.13
ABCA1O95477 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC14.23□□□□□ -0.13
ABCA1O95477 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
ABCA1O95477 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
ABCA1O95477 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
ABCA1O95477 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC14.22□□□□□ -0.13
ABCA1O95477 NOC2LP2-201ENST00000407594 1944 ntBASIC14.22□□□□□ -0.13
ABCA1O95477 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
ABCA1O95477 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC14.22□□□□□ -0.13
ABCA1O95477 AC107890.1-201ENST00000422478 521 ntBASIC14.22□□□□□ -0.13
ABCA1O95477 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC14.22□□□□□ -0.13
ABCA1O95477 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
ABCA1O95477 STK19B-204ENST00000512515 211 ntBASIC14.22□□□□□ -0.13
ABCA1O95477 TSFM-210ENST00000550559 897 ntTSL 5 BASIC14.22□□□□□ -0.13
ABCA1O95477 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
ABCA1O95477 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
ABCA1O95477 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
ABCA1O95477 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
ABCA1O95477 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC14.22□□□□□ -0.13
ABCA1O95477 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
ABCA1O95477 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
ABCA1O95477 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
ABCA1O95477 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
ABCA1O95477 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC14.22□□□□□ -0.13
ABCA1O95477 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC14.22□□□□□ -0.13
ABCA1O95477 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
ABCA1O95477 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms