Protein–RNA interactions for Protein: Q9Y6N3

CLCA3P, Calcium-activated chloride channel regulator family member 3, humanhuman

Predictions only

Length 262 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCA3PQ9Y6N3 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
CLCA3PQ9Y6N3 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
CLCA3PQ9Y6N3 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC22.6■■□□□ 1.21
CLCA3PQ9Y6N3 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
CLCA3PQ9Y6N3 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC22.59■■□□□ 1.21
CLCA3PQ9Y6N3 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC22.59■■□□□ 1.21
CLCA3PQ9Y6N3 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC22.59■■□□□ 1.21
CLCA3PQ9Y6N3 AC129492.7-201ENST00000622992 756 ntBASIC22.59■■□□□ 1.21
CLCA3PQ9Y6N3 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
CLCA3PQ9Y6N3 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC22.59■■□□□ 1.21
CLCA3PQ9Y6N3 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC22.58■■□□□ 1.21
CLCA3PQ9Y6N3 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
CLCA3PQ9Y6N3 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
CLCA3PQ9Y6N3 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
CLCA3PQ9Y6N3 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CLCA3PQ9Y6N3 AC018755.3-202ENST00000596210 929 ntBASIC22.57■■□□□ 1.2
CLCA3PQ9Y6N3 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
CLCA3PQ9Y6N3 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC22.57■■□□□ 1.2
CLCA3PQ9Y6N3 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CLCA3PQ9Y6N3 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC22.57■■□□□ 1.2
CLCA3PQ9Y6N3 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CLCA3PQ9Y6N3 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
CLCA3PQ9Y6N3 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC22.56■■□□□ 1.2
CLCA3PQ9Y6N3 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC22.56■■□□□ 1.2
CLCA3PQ9Y6N3 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC22.56■■□□□ 1.2
CLCA3PQ9Y6N3 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CLCA3PQ9Y6N3 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC22.56■■□□□ 1.2
CLCA3PQ9Y6N3 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
CLCA3PQ9Y6N3 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
CLCA3PQ9Y6N3 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
CLCA3PQ9Y6N3 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CLCA3PQ9Y6N3 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
CLCA3PQ9Y6N3 DUX4L9-201ENST00000449051 1259 ntBASIC22.55■■□□□ 1.2
CLCA3PQ9Y6N3 ATP5G2P3-201ENST00000429083 425 ntBASIC22.54■■□□□ 1.2
CLCA3PQ9Y6N3 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CLCA3PQ9Y6N3 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CLCA3PQ9Y6N3 TSPY13P-201ENST00000338964 914 ntBASIC22.53■■□□□ 1.2
CLCA3PQ9Y6N3 AC004987.1-201ENST00000428627 508 ntBASIC22.53■■□□□ 1.2
CLCA3PQ9Y6N3 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CLCA3PQ9Y6N3 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC22.53■■□□□ 1.2
CLCA3PQ9Y6N3 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CLCA3PQ9Y6N3 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CLCA3PQ9Y6N3 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CLCA3PQ9Y6N3 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CLCA3PQ9Y6N3 MIR6765-201ENST00000614092 87 ntBASIC22.52■■□□□ 1.2
CLCA3PQ9Y6N3 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC22.52■■□□□ 1.2
CLCA3PQ9Y6N3 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC22.52■■□□□ 1.19
CLCA3PQ9Y6N3 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
CLCA3PQ9Y6N3 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC22.51■■□□□ 1.19
CLCA3PQ9Y6N3 SPCS2P3-201ENST00000500401 656 ntBASIC22.51■■□□□ 1.19
CLCA3PQ9Y6N3 DUX4L18-201ENST00000553347 1267 ntBASIC22.51■■□□□ 1.19
CLCA3PQ9Y6N3 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC22.51■■□□□ 1.19
CLCA3PQ9Y6N3 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC22.51■■□□□ 1.19
CLCA3PQ9Y6N3 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC22.51■■□□□ 1.19
CLCA3PQ9Y6N3 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
CLCA3PQ9Y6N3 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
CLCA3PQ9Y6N3 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CLCA3PQ9Y6N3 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
CLCA3PQ9Y6N3 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
CLCA3PQ9Y6N3 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
CLCA3PQ9Y6N3 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC22.5■■□□□ 1.19
CLCA3PQ9Y6N3 AL033527.3-201ENST00000566366 1196 ntBASIC22.5■■□□□ 1.19
CLCA3PQ9Y6N3 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
CLCA3PQ9Y6N3 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CLCA3PQ9Y6N3 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
CLCA3PQ9Y6N3 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CLCA3PQ9Y6N3 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
CLCA3PQ9Y6N3 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CLCA3PQ9Y6N3 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC22.49■■□□□ 1.19
CLCA3PQ9Y6N3 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CLCA3PQ9Y6N3 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC22.49■■□□□ 1.19
CLCA3PQ9Y6N3 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC22.49■■□□□ 1.19
CLCA3PQ9Y6N3 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC22.49■■□□□ 1.19
CLCA3PQ9Y6N3 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC22.49■■□□□ 1.19
CLCA3PQ9Y6N3 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
CLCA3PQ9Y6N3 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CLCA3PQ9Y6N3 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
CLCA3PQ9Y6N3 KRT18P10-201ENST00000388836 1287 ntBASIC22.48■■□□□ 1.19
CLCA3PQ9Y6N3 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC22.48■■□□□ 1.19
CLCA3PQ9Y6N3 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC22.48■■□□□ 1.19
CLCA3PQ9Y6N3 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
CLCA3PQ9Y6N3 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
CLCA3PQ9Y6N3 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CLCA3PQ9Y6N3 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CLCA3PQ9Y6N3 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
CLCA3PQ9Y6N3 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
CLCA3PQ9Y6N3 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC22.46■■□□□ 1.19
CLCA3PQ9Y6N3 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CLCA3PQ9Y6N3 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
CLCA3PQ9Y6N3 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
CLCA3PQ9Y6N3 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CLCA3PQ9Y6N3 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC22.46■■□□□ 1.19
CLCA3PQ9Y6N3 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CLCA3PQ9Y6N3 AC092803.2-201ENST00000564287 1899 ntBASIC22.45■■□□□ 1.19
CLCA3PQ9Y6N3 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC22.45■■□□□ 1.18
CLCA3PQ9Y6N3 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC22.45■■□□□ 1.18
CLCA3PQ9Y6N3 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC22.45■■□□□ 1.18
CLCA3PQ9Y6N3 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
CLCA3PQ9Y6N3 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
CLCA3PQ9Y6N3 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC22.44■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 12 ms