Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC25.15■■□□□ 1.62
PCDHA3Q9Y5H8 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC25.15■■□□□ 1.62
PCDHA3Q9Y5H8 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC25.15■■□□□ 1.62
PCDHA3Q9Y5H8 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
PCDHA3Q9Y5H8 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
PCDHA3Q9Y5H8 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
PCDHA3Q9Y5H8 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC25.14■■□□□ 1.62
PCDHA3Q9Y5H8 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
PCDHA3Q9Y5H8 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC25.13■■□□□ 1.61
PCDHA3Q9Y5H8 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
PCDHA3Q9Y5H8 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC25.13■■□□□ 1.61
PCDHA3Q9Y5H8 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC25.13■■□□□ 1.61
PCDHA3Q9Y5H8 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
PCDHA3Q9Y5H8 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
PCDHA3Q9Y5H8 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
PCDHA3Q9Y5H8 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
PCDHA3Q9Y5H8 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
PCDHA3Q9Y5H8 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC25.12■■□□□ 1.61
PCDHA3Q9Y5H8 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
PCDHA3Q9Y5H8 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC25.11■■□□□ 1.61
PCDHA3Q9Y5H8 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
PCDHA3Q9Y5H8 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
PCDHA3Q9Y5H8 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC25.11■■□□□ 1.61
PCDHA3Q9Y5H8 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC25.1■■□□□ 1.61
PCDHA3Q9Y5H8 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
PCDHA3Q9Y5H8 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC25.1■■□□□ 1.61
PCDHA3Q9Y5H8 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC25.1■■□□□ 1.61
PCDHA3Q9Y5H8 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC25.1■■□□□ 1.61
PCDHA3Q9Y5H8 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
PCDHA3Q9Y5H8 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC25.1■■□□□ 1.61
PCDHA3Q9Y5H8 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC25.1■■□□□ 1.61
PCDHA3Q9Y5H8 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
PCDHA3Q9Y5H8 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
PCDHA3Q9Y5H8 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
PCDHA3Q9Y5H8 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
PCDHA3Q9Y5H8 AL139125.2-201ENST00000623134 1869 ntBASIC25.09■■□□□ 1.61
PCDHA3Q9Y5H8 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC25.09■■□□□ 1.61
PCDHA3Q9Y5H8 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC25.09■■□□□ 1.61
PCDHA3Q9Y5H8 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC25.09■■□□□ 1.61
PCDHA3Q9Y5H8 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
PCDHA3Q9Y5H8 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC25.09■■□□□ 1.61
PCDHA3Q9Y5H8 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
PCDHA3Q9Y5H8 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
PCDHA3Q9Y5H8 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
PCDHA3Q9Y5H8 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC25.08■■□□□ 1.61
PCDHA3Q9Y5H8 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC25.08■■□□□ 1.61
PCDHA3Q9Y5H8 AC097639.1-201ENST00000565519 1891 ntBASIC25.08■■□□□ 1.61
PCDHA3Q9Y5H8 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
PCDHA3Q9Y5H8 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC25.07■■□□□ 1.6
PCDHA3Q9Y5H8 AL157400.5-201ENST00000507624 621 ntBASIC25.07■■□□□ 1.6
PCDHA3Q9Y5H8 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
PCDHA3Q9Y5H8 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC25.07■■□□□ 1.6
PCDHA3Q9Y5H8 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
PCDHA3Q9Y5H8 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
PCDHA3Q9Y5H8 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC25.06■■□□□ 1.6
PCDHA3Q9Y5H8 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC25.06■■□□□ 1.6
PCDHA3Q9Y5H8 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
PCDHA3Q9Y5H8 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
PCDHA3Q9Y5H8 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
PCDHA3Q9Y5H8 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC25.06■■□□□ 1.6
PCDHA3Q9Y5H8 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
PCDHA3Q9Y5H8 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
PCDHA3Q9Y5H8 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC25.05■■□□□ 1.6
PCDHA3Q9Y5H8 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC25.05■■□□□ 1.6
PCDHA3Q9Y5H8 PREB-202ENST00000406567 1910 ntTSL 5 BASIC25.05■■□□□ 1.6
PCDHA3Q9Y5H8 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
PCDHA3Q9Y5H8 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
PCDHA3Q9Y5H8 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
PCDHA3Q9Y5H8 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
PCDHA3Q9Y5H8 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC25.04■■□□□ 1.6
PCDHA3Q9Y5H8 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
PCDHA3Q9Y5H8 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
PCDHA3Q9Y5H8 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC25.04■■□□□ 1.6
PCDHA3Q9Y5H8 PFN2-211ENST00000489155 636 ntTSL 4 BASIC25.04■■□□□ 1.6
PCDHA3Q9Y5H8 AC025884.2-201ENST00000553429 711 ntBASIC25.04■■□□□ 1.6
PCDHA3Q9Y5H8 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
PCDHA3Q9Y5H8 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
PCDHA3Q9Y5H8 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
PCDHA3Q9Y5H8 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC25.03■■□□□ 1.6
PCDHA3Q9Y5H8 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC25.03■■□□□ 1.6
PCDHA3Q9Y5H8 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
PCDHA3Q9Y5H8 AC060814.1-201ENST00000554326 538 ntBASIC25.02■■□□□ 1.6
PCDHA3Q9Y5H8 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
PCDHA3Q9Y5H8 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
PCDHA3Q9Y5H8 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC25.01■■□□□ 1.59
PCDHA3Q9Y5H8 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
PCDHA3Q9Y5H8 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC25.01■■□□□ 1.59
PCDHA3Q9Y5H8 MOB2-207ENST00000614710 705 ntTSL 5 BASIC25.01■■□□□ 1.59
PCDHA3Q9Y5H8 SLC6A10P-202ENST00000431994 2058 ntBASIC25.01■■□□□ 1.59
PCDHA3Q9Y5H8 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC25■■□□□ 1.59
PCDHA3Q9Y5H8 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
PCDHA3Q9Y5H8 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC25■■□□□ 1.59
PCDHA3Q9Y5H8 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC25■■□□□ 1.59
PCDHA3Q9Y5H8 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC25■■□□□ 1.59
PCDHA3Q9Y5H8 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC25■■□□□ 1.59
PCDHA3Q9Y5H8 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
PCDHA3Q9Y5H8 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
PCDHA3Q9Y5H8 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
PCDHA3Q9Y5H8 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
PCDHA3Q9Y5H8 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 13.8 ms