Protein–RNA interactions for Protein: Q9Y221

NIP7, 60S ribosome subunit biogenesis protein NIP7 homolog, humanhuman

Known RBP eCLIP

Length 180 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIP7Q9Y221 A2M-203ENST00000462568 546 ntTSL 24.68□□□□□ -1.661e-18■□□□□ 8.8
NIP7Q9Y221 A2M-213ENST00000546069 593 ntTSL 58.18□□□□□ -1.16e-16■□□□□ 8.8
NIP7Q9Y221 GNL3-201ENST00000394799 2041 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.13e-10■□□□□ 8.7
NIP7Q9Y221 GNL3-202ENST00000418458 2040 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.073e-10■□□□□ 8.7
NIP7Q9Y221 GNL3-211ENST00000496254 2118 ntTSL 56.55□□□□□ -1.363e-10■□□□□ 8.7
NIP7Q9Y221 GNL3-209ENST00000484022 668 ntTSL 25.05□□□□□ -1.63e-10■□□□□ 8.7
NIP7Q9Y221 LOX-206ENST00000639739 1626 ntTSL 5 BASIC19.78■□□□□ 0.762e-8■□□□□ 8.7
NIP7Q9Y221 SORL1-208ENST00000529445 616 ntTSL 215.92■□□□□ 0.142e-8■□□□□ 8.7
NIP7Q9Y221 SORL1-203ENST00000524873 574 ntTSL 314.24□□□□□ -0.132e-8■□□□□ 8.7
NIP7Q9Y221 LOX-201ENST00000231004 5102 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.262e-8■□□□□ 8.7
NIP7Q9Y221 RPS13-209ENST00000533969 355 ntTSL 317.96■□□□□ 0.477e-43■□□□□ 8.6
NIP7Q9Y221 SNORD14B-201ENST00000364533 90 ntBASIC2.34□□□□□ -2.037e-43■□□□□ 8.6
NIP7Q9Y221 CCAR1-218ENST00000630771 4540 ntTSL 5 BASIC9.66□□□□□ -0.863e-24■□□□□ 8.6
NIP7Q9Y221 CCAR1-213ENST00000541012 2432 ntTSL 1 (best)7.65□□□□□ -1.183e-24■□□□□ 8.6
NIP7Q9Y221 CCAR1-205ENST00000483264 487 ntTSL 57.55□□□□□ -1.23e-24■□□□□ 8.6
NIP7Q9Y221 CCAR1-214ENST00000543225 2407 ntTSL 1 (best)7.53□□□□□ -1.23e-24■□□□□ 8.6
NIP7Q9Y221 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.213e-24■□□□□ 8.6
NIP7Q9Y221 CCAR1-207ENST00000536012 2447 ntTSL 1 (best)7.41□□□□□ -1.223e-24■□□□□ 8.6
NIP7Q9Y221 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC6.42□□□□□ -1.383e-24■□□□□ 8.6
NIP7Q9Y221 CCAR1-215ENST00000543229 2475 ntTSL 26.34□□□□□ -1.43e-24■□□□□ 8.6
NIP7Q9Y221 CCAR1-211ENST00000539539 3224 ntTSL 25.19□□□□□ -1.583e-24■□□□□ 8.6
NIP7Q9Y221 CCAR1-212ENST00000540210 3415 ntTSL 1 (best)5.02□□□□□ -1.613e-24■□□□□ 8.6
NIP7Q9Y221 SNORD98-201ENST00000636377 67 ntBASIC1.97□□□□□ -2.093e-24■□□□□ 8.6
NIP7Q9Y221 APOE-202ENST00000425718 923 ntTSL 1 (best)30.59■■■□□ 2.491e-12■□□□□ 8.6
NIP7Q9Y221 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.241e-12■□□□□ 8.6
NIP7Q9Y221 APOE-204ENST00000446996 737 ntTSL 228.22■■■□□ 2.111e-12■□□□□ 8.6
NIP7Q9Y221 APOE-203ENST00000434152 864 ntTSL 226.32■■□□□ 1.81e-12■□□□□ 8.6
NIP7Q9Y221 RNF149-202ENST00000424632 2010 ntTSL 224.12■■□□□ 1.451e-323■□□□□ 8.6
NIP7Q9Y221 SNORD89-201ENST00000390981 114 ntBASIC0.72□□□□□ -2.291e-323■□□□□ 8.6
NIP7Q9Y221 GTF2A1-201ENST00000298173 1677 ntTSL 230.65■■■□□ 2.59e-7■□□□□ 8.5
NIP7Q9Y221 GTF2A1-204ENST00000556268 864 ntTSL 511.89□□□□□ -0.519e-7■□□□□ 8.5
NIP7Q9Y221 GTF2A1-203ENST00000553612 6306 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.949e-7■□□□□ 8.5
NIP7Q9Y221 GTF2A1-202ENST00000434192 1199 ntTSL 1 (best) BASIC8.55□□□□□ -1.049e-7■□□□□ 8.5
NIP7Q9Y221 SNORA79-201ENST00000408376 140 ntBASIC0.76□□□□□ -2.299e-7■□□□□ 8.5
NIP7Q9Y221 AGRN-202ENST00000419249 861 ntTSL 323.63■■□□□ 1.373e-6■□□□□ 8.4
NIP7Q9Y221 SERPINF1-204ENST00000571149 431 ntTSL 322.22■■□□□ 1.153e-13■□□□□ 8.4
NIP7Q9Y221 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.773e-6■□□□□ 8.4
NIP7Q9Y221 SERPINF1-212ENST00000577053 731 ntTSL 515.78■□□□□ 0.123e-13■□□□□ 8.4
NIP7Q9Y221 SERPINF1-202ENST00000570731 459 ntTSL 515.17■□□□□ 0.023e-13■□□□□ 8.4
NIP7Q9Y221 PCK1-206ENST00000498194 783 ntTSL 214.78□□□□□ -0.043e-6■□□□□ 8.4
NIP7Q9Y221 SLC7A2-206ENST00000640220 2068 ntTSL 1 (best)14□□□□□ -0.173e-6■□□□□ 8.4
NIP7Q9Y221 SLC7A2-201ENST00000004531 7560 ntTSL 1 (best) BASIC10.02□□□□□ -0.813e-6■□□□□ 8.4
NIP7Q9Y221 SLC7A2-202ENST00000398090 7557 ntAPPRIS P3 TSL 1 (best) BASIC9.95□□□□□ -0.823e-6■□□□□ 8.4
NIP7Q9Y221 SLC7A2-204ENST00000494857 7622 ntAPPRIS ALT1 TSL 5 BASIC9.19□□□□□ -0.943e-6■□□□□ 8.4
NIP7Q9Y221 SLC7A2-203ENST00000470360 7638 ntAPPRIS P3 TSL 5 BASIC8.67□□□□□ -1.023e-6■□□□□ 8.4
NIP7Q9Y221 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC23.27■■□□□ 1.322e-9■□□□□ 8.3
NIP7Q9Y221 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC22.93■■□□□ 1.262e-9■□□□□ 8.3
NIP7Q9Y221 ALDOA-215ENST00000565355 538 ntTSL 520.15■□□□□ 0.822e-9■□□□□ 8.3
NIP7Q9Y221 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC20.04■□□□□ 0.82e-9■□□□□ 8.3
NIP7Q9Y221 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.672e-9■□□□□ 8.3
NIP7Q9Y221 ALDOA-217ENST00000566130 801 ntTSL 218.44■□□□□ 0.542e-9■□□□□ 8.3
NIP7Q9Y221 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.532e-9■□□□□ 8.3
NIP7Q9Y221 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC17.94■□□□□ 0.462e-9■□□□□ 8.3
NIP7Q9Y221 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.432e-9■□□□□ 8.3
NIP7Q9Y221 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.422e-9■□□□□ 8.3
NIP7Q9Y221 ALDOA-202ENST00000395240 1447 ntAPPRIS ALT1 TSL 5 BASIC17.34■□□□□ 0.372e-9■□□□□ 8.3
NIP7Q9Y221 ALDOA-213ENST00000564595 1663 ntTSL 2 BASIC16.89■□□□□ 0.292e-9■□□□□ 8.3
NIP7Q9Y221 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC16.87■□□□□ 0.292e-9■□□□□ 8.3
NIP7Q9Y221 ALDOA-211ENST00000564521 2534 ntTSL 514.48□□□□□ -0.092e-9■□□□□ 8.3
NIP7Q9Y221 FASN-202ENST00000578424 951 ntTSL 223.88■■□□□ 1.411e-13■□□□□ 8.3
NIP7Q9Y221 FASN-204ENST00000580382 681 ntTSL 322.35■■□□□ 1.171e-13■□□□□ 8.3
NIP7Q9Y221 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC15.18■□□□□ 0.021e-13■□□□□ 8.3
NIP7Q9Y221 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.051e-13■□□□□ 8.3
NIP7Q9Y221 C14orf159-221ENST00000521334 909 ntTSL 324.56■■□□□ 1.521e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-225ENST00000522837 558 ntTSL 417.47■□□□□ 0.391e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-218ENST00000521064 544 ntTSL 416.24■□□□□ 0.191e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-222ENST00000522170 853 ntTSL 315.57■□□□□ 0.081e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-214ENST00000519950 1060 ntTSL 315.23■□□□□ 0.031e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-232ENST00000523894 862 ntTSL 1 (best)15.23■□□□□ 0.031e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-206ENST00000517362 583 ntTSL 414.33□□□□□ -0.121e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-215ENST00000519994 1148 ntTSL 1 (best)14.33□□□□□ -0.121e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-219ENST00000521077 2719 ntTSL 1 (best) BASIC13.69□□□□□ -0.221e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-207ENST00000517518 1597 ntTSL 1 (best)13.19□□□□□ -0.31e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-201ENST00000256324 2967 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.321e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-230ENST00000523837 2814 ntTSL 512.99□□□□□ -0.331e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-204ENST00000428926 2538 ntAPPRIS P3 TSL 2 BASIC12.95□□□□□ -0.341e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-212ENST00000518871 484 ntTSL 412.7□□□□□ -0.381e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-223ENST00000522322 2856 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-229ENST00000523816 2764 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.461e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-217ENST00000520328 2687 ntTSL 2 BASIC11.56□□□□□ -0.561e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-211ENST00000518868 3075 ntAPPRIS ALT1 TSL 2 BASIC11.31□□□□□ -0.61e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-228ENST00000523771 2976 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.611e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-233ENST00000524232 550 ntTSL 210.5□□□□□ -0.731e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-210ENST00000518665 959 ntTSL 1 (best) BASIC10.33□□□□□ -0.761e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-213ENST00000519019 834 ntTSL 3 BASIC9.7□□□□□ -0.861e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-231ENST00000523879 650 ntTSL 58.63□□□□□ -1.031e-9■□□□□ 8.3
NIP7Q9Y221 SNORA11B-201ENST00000408175 129 ntBASIC7.96□□□□□ -1.141e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-209ENST00000518649 555 ntTSL 47.44□□□□□ -1.221e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-220ENST00000521081 622 ntTSL 27.13□□□□□ -1.271e-9■□□□□ 8.3
NIP7Q9Y221 SOX9-201ENST00000245479 3935 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.297e-10■□□□□ 8.2
NIP7Q9Y221 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.771e-25■□□□□ 8.2
NIP7Q9Y221 GAPDH-208ENST00000474249 1333 ntTSL 517.75■□□□□ 0.431e-25■□□□□ 8.2
NIP7Q9Y221 GAPDH-209ENST00000492719 930 ntTSL 317.73■□□□□ 0.431e-25■□□□□ 8.2
NIP7Q9Y221 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC17.7■□□□□ 0.421e-25■□□□□ 8.2
NIP7Q9Y221 GAPDH-204ENST00000396859 1256 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.391e-25■□□□□ 8.2
NIP7Q9Y221 GAPDH-206ENST00000466525 1720 ntTSL 516.62■□□□□ 0.251e-25■□□□□ 8.2
NIP7Q9Y221 GAPDH-205ENST00000396861 1348 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.251e-25■□□□□ 8.2
NIP7Q9Y221 GAPDH-202ENST00000396856 1266 ntTSL 5 BASIC15.84■□□□□ 0.131e-25■□□□□ 8.2
NIP7Q9Y221 GAPDH-207ENST00000466588 1363 ntTSL 514.45□□□□□ -0.11e-25■□□□□ 8.2
NIP7Q9Y221 GAPDH-211ENST00000619601 1086 ntTSL 5 BASIC14.32□□□□□ -0.121e-25■□□□□ 8.2
Retrieved 100 of 1,619 protein–RNA pairs in 44.2 ms