Protein–RNA interactions for Protein: Q9Y221

NIP7, 60S ribosome subunit biogenesis protein NIP7 homolog, humanhuman

Known RBP eCLIP

Length 180 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIP7Q9Y221 A2M-203ENST00000462568 546 ntTSL 24.68□□□□□ -1.661e-18■□□□□ 8.8
NIP7Q9Y221 A2M-213ENST00000546069 593 ntTSL 58.18□□□□□ -1.16e-16■□□□□ 8.8
NIP7Q9Y221 GNL3-201ENST00000394799 2041 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.13e-10■□□□□ 8.7
NIP7Q9Y221 GNL3-202ENST00000418458 2040 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.073e-10■□□□□ 8.7
NIP7Q9Y221 GNL3-211ENST00000496254 2118 ntTSL 56.55□□□□□ -1.363e-10■□□□□ 8.7
NIP7Q9Y221 GNL3-209ENST00000484022 668 ntTSL 25.05□□□□□ -1.63e-10■□□□□ 8.7
NIP7Q9Y221 LOX-206ENST00000639739 1626 ntTSL 5 BASIC19.78■□□□□ 0.762e-8■□□□□ 8.7
NIP7Q9Y221 SORL1-208ENST00000529445 616 ntTSL 215.92■□□□□ 0.142e-8■□□□□ 8.7
NIP7Q9Y221 SORL1-203ENST00000524873 574 ntTSL 314.24□□□□□ -0.132e-8■□□□□ 8.7
NIP7Q9Y221 LOX-201ENST00000231004 5102 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.262e-8■□□□□ 8.7
NIP7Q9Y221 RPS13-209ENST00000533969 355 ntTSL 317.96■□□□□ 0.477e-43■□□□□ 8.6
NIP7Q9Y221 SNORD14B-201ENST00000364533 90 ntBASIC2.34□□□□□ -2.037e-43■□□□□ 8.6
NIP7Q9Y221 CCAR1-218ENST00000630771 4540 ntTSL 5 BASIC9.66□□□□□ -0.863e-24■□□□□ 8.6
NIP7Q9Y221 CCAR1-213ENST00000541012 2432 ntTSL 1 (best)7.65□□□□□ -1.183e-24■□□□□ 8.6
NIP7Q9Y221 CCAR1-205ENST00000483264 487 ntTSL 57.55□□□□□ -1.23e-24■□□□□ 8.6
NIP7Q9Y221 CCAR1-214ENST00000543225 2407 ntTSL 1 (best)7.53□□□□□ -1.23e-24■□□□□ 8.6
NIP7Q9Y221 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.213e-24■□□□□ 8.6
NIP7Q9Y221 CCAR1-207ENST00000536012 2447 ntTSL 1 (best)7.41□□□□□ -1.223e-24■□□□□ 8.6
NIP7Q9Y221 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC6.42□□□□□ -1.383e-24■□□□□ 8.6
NIP7Q9Y221 CCAR1-215ENST00000543229 2475 ntTSL 26.34□□□□□ -1.43e-24■□□□□ 8.6
NIP7Q9Y221 CCAR1-211ENST00000539539 3224 ntTSL 25.19□□□□□ -1.583e-24■□□□□ 8.6
NIP7Q9Y221 CCAR1-212ENST00000540210 3415 ntTSL 1 (best)5.02□□□□□ -1.613e-24■□□□□ 8.6
NIP7Q9Y221 SNORD98-201ENST00000636377 67 ntBASIC1.97□□□□□ -2.093e-24■□□□□ 8.6
NIP7Q9Y221 APOE-202ENST00000425718 923 ntTSL 1 (best)30.59■■■□□ 2.491e-12■□□□□ 8.6
NIP7Q9Y221 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.241e-12■□□□□ 8.6
NIP7Q9Y221 APOE-204ENST00000446996 737 ntTSL 228.22■■■□□ 2.111e-12■□□□□ 8.6
NIP7Q9Y221 APOE-203ENST00000434152 864 ntTSL 226.32■■□□□ 1.81e-12■□□□□ 8.6
NIP7Q9Y221 RNF149-202ENST00000424632 2010 ntTSL 224.12■■□□□ 1.451e-323■□□□□ 8.6
NIP7Q9Y221 SNORD89-201ENST00000390981 114 ntBASIC0.72□□□□□ -2.291e-323■□□□□ 8.6
NIP7Q9Y221 GTF2A1-201ENST00000298173 1677 ntTSL 230.65■■■□□ 2.59e-7■□□□□ 8.5
NIP7Q9Y221 GTF2A1-204ENST00000556268 864 ntTSL 511.89□□□□□ -0.519e-7■□□□□ 8.5
NIP7Q9Y221 GTF2A1-203ENST00000553612 6306 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.949e-7■□□□□ 8.5
NIP7Q9Y221 GTF2A1-202ENST00000434192 1199 ntTSL 1 (best) BASIC8.55□□□□□ -1.049e-7■□□□□ 8.5
NIP7Q9Y221 SNORA79-201ENST00000408376 140 ntBASIC0.76□□□□□ -2.299e-7■□□□□ 8.5
NIP7Q9Y221 AGRN-202ENST00000419249 861 ntTSL 323.63■■□□□ 1.373e-6■□□□□ 8.4
NIP7Q9Y221 SERPINF1-204ENST00000571149 431 ntTSL 322.22■■□□□ 1.153e-13■□□□□ 8.4
NIP7Q9Y221 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.773e-6■□□□□ 8.4
NIP7Q9Y221 SERPINF1-212ENST00000577053 731 ntTSL 515.78■□□□□ 0.123e-13■□□□□ 8.4
NIP7Q9Y221 SERPINF1-202ENST00000570731 459 ntTSL 515.17■□□□□ 0.023e-13■□□□□ 8.4
NIP7Q9Y221 PCK1-206ENST00000498194 783 ntTSL 214.78□□□□□ -0.043e-6■□□□□ 8.4
NIP7Q9Y221 SLC7A2-206ENST00000640220 2068 ntTSL 1 (best)14□□□□□ -0.173e-6■□□□□ 8.4
NIP7Q9Y221 SLC7A2-201ENST00000004531 7560 ntTSL 1 (best) BASIC10.02□□□□□ -0.813e-6■□□□□ 8.4
NIP7Q9Y221 SLC7A2-202ENST00000398090 7557 ntAPPRIS P3 TSL 1 (best) BASIC9.95□□□□□ -0.823e-6■□□□□ 8.4
NIP7Q9Y221 SLC7A2-204ENST00000494857 7622 ntAPPRIS ALT1 TSL 5 BASIC9.19□□□□□ -0.943e-6■□□□□ 8.4
NIP7Q9Y221 SLC7A2-203ENST00000470360 7638 ntAPPRIS P3 TSL 5 BASIC8.67□□□□□ -1.023e-6■□□□□ 8.4
NIP7Q9Y221 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC23.27■■□□□ 1.322e-9■□□□□ 8.3
NIP7Q9Y221 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC22.93■■□□□ 1.262e-9■□□□□ 8.3
NIP7Q9Y221 ALDOA-215ENST00000565355 538 ntTSL 520.15■□□□□ 0.822e-9■□□□□ 8.3
NIP7Q9Y221 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC20.04■□□□□ 0.82e-9■□□□□ 8.3
NIP7Q9Y221 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.672e-9■□□□□ 8.3
NIP7Q9Y221 ALDOA-217ENST00000566130 801 ntTSL 218.44■□□□□ 0.542e-9■□□□□ 8.3
NIP7Q9Y221 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.532e-9■□□□□ 8.3
NIP7Q9Y221 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC17.94■□□□□ 0.462e-9■□□□□ 8.3
NIP7Q9Y221 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.432e-9■□□□□ 8.3
NIP7Q9Y221 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.422e-9■□□□□ 8.3
NIP7Q9Y221 ALDOA-202ENST00000395240 1447 ntAPPRIS ALT1 TSL 5 BASIC17.34■□□□□ 0.372e-9■□□□□ 8.3
NIP7Q9Y221 ALDOA-213ENST00000564595 1663 ntTSL 2 BASIC16.89■□□□□ 0.292e-9■□□□□ 8.3
NIP7Q9Y221 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC16.87■□□□□ 0.292e-9■□□□□ 8.3
NIP7Q9Y221 ALDOA-211ENST00000564521 2534 ntTSL 514.48□□□□□ -0.092e-9■□□□□ 8.3
NIP7Q9Y221 FASN-202ENST00000578424 951 ntTSL 223.88■■□□□ 1.411e-13■□□□□ 8.3
NIP7Q9Y221 FASN-204ENST00000580382 681 ntTSL 322.35■■□□□ 1.171e-13■□□□□ 8.3
NIP7Q9Y221 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC15.18■□□□□ 0.021e-13■□□□□ 8.3
NIP7Q9Y221 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.051e-13■□□□□ 8.3
NIP7Q9Y221 C14orf159-221ENST00000521334 909 ntTSL 324.56■■□□□ 1.521e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-225ENST00000522837 558 ntTSL 417.47■□□□□ 0.391e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-218ENST00000521064 544 ntTSL 416.24■□□□□ 0.191e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-222ENST00000522170 853 ntTSL 315.57■□□□□ 0.081e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-214ENST00000519950 1060 ntTSL 315.23■□□□□ 0.031e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-232ENST00000523894 862 ntTSL 1 (best)15.23■□□□□ 0.031e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-206ENST00000517362 583 ntTSL 414.33□□□□□ -0.121e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-215ENST00000519994 1148 ntTSL 1 (best)14.33□□□□□ -0.121e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-219ENST00000521077 2719 ntTSL 1 (best) BASIC13.69□□□□□ -0.221e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-207ENST00000517518 1597 ntTSL 1 (best)13.19□□□□□ -0.31e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-201ENST00000256324 2967 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.321e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-230ENST00000523837 2814 ntTSL 512.99□□□□□ -0.331e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-204ENST00000428926 2538 ntAPPRIS P3 TSL 2 BASIC12.95□□□□□ -0.341e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-212ENST00000518871 484 ntTSL 412.7□□□□□ -0.381e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-223ENST00000522322 2856 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-229ENST00000523816 2764 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.461e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-217ENST00000520328 2687 ntTSL 2 BASIC11.56□□□□□ -0.561e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-211ENST00000518868 3075 ntAPPRIS ALT1 TSL 2 BASIC11.31□□□□□ -0.61e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-228ENST00000523771 2976 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.611e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-233ENST00000524232 550 ntTSL 210.5□□□□□ -0.731e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-210ENST00000518665 959 ntTSL 1 (best) BASIC10.33□□□□□ -0.761e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-213ENST00000519019 834 ntTSL 3 BASIC9.7□□□□□ -0.861e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-231ENST00000523879 650 ntTSL 58.63□□□□□ -1.031e-9■□□□□ 8.3
NIP7Q9Y221 SNORA11B-201ENST00000408175 129 ntBASIC7.96□□□□□ -1.141e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-209ENST00000518649 555 ntTSL 47.44□□□□□ -1.221e-9■□□□□ 8.3
NIP7Q9Y221 C14orf159-220ENST00000521081 622 ntTSL 27.13□□□□□ -1.271e-9■□□□□ 8.3
NIP7Q9Y221 SOX9-201ENST00000245479 3935 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.297e-10■□□□□ 8.2
NIP7Q9Y221 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.771e-25■□□□□ 8.2
NIP7Q9Y221 GAPDH-208ENST00000474249 1333 ntTSL 517.75■□□□□ 0.431e-25■□□□□ 8.2
NIP7Q9Y221 GAPDH-209ENST00000492719 930 ntTSL 317.73■□□□□ 0.431e-25■□□□□ 8.2
NIP7Q9Y221 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC17.7■□□□□ 0.421e-25■□□□□ 8.2
NIP7Q9Y221 GAPDH-204ENST00000396859 1256 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.391e-25■□□□□ 8.2
NIP7Q9Y221 GAPDH-206ENST00000466525 1720 ntTSL 516.62■□□□□ 0.251e-25■□□□□ 8.2
NIP7Q9Y221 GAPDH-205ENST00000396861 1348 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.251e-25■□□□□ 8.2
NIP7Q9Y221 GAPDH-202ENST00000396856 1266 ntTSL 5 BASIC15.84■□□□□ 0.131e-25■□□□□ 8.2
NIP7Q9Y221 GAPDH-207ENST00000466588 1363 ntTSL 514.45□□□□□ -0.11e-25■□□□□ 8.2
NIP7Q9Y221 GAPDH-211ENST00000619601 1086 ntTSL 5 BASIC14.32□□□□□ -0.121e-25■□□□□ 8.2
Retrieved 100 of 1,619 protein–RNA pairs in 33.6 ms