Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC24.1■■□□□ 1.45
TM9SF3Q9HD45 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
TM9SF3Q9HD45 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC24.09■■□□□ 1.45
TM9SF3Q9HD45 THA1P-201ENST00000590384 1145 ntBASIC24.09■■□□□ 1.45
TM9SF3Q9HD45 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC24.09■■□□□ 1.45
TM9SF3Q9HD45 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC24.09■■□□□ 1.45
TM9SF3Q9HD45 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC24.08■■□□□ 1.45
TM9SF3Q9HD45 CREM-210ENST00000374721 2020 ntTSL 5 BASIC24.08■■□□□ 1.45
TM9SF3Q9HD45 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
TM9SF3Q9HD45 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC24.08■■□□□ 1.45
TM9SF3Q9HD45 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC24.08■■□□□ 1.45
TM9SF3Q9HD45 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
TM9SF3Q9HD45 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC24.08■■□□□ 1.45
TM9SF3Q9HD45 LONRF2P2-201ENST00000439212 571 ntBASIC24.08■■□□□ 1.45
TM9SF3Q9HD45 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
TM9SF3Q9HD45 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
TM9SF3Q9HD45 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
TM9SF3Q9HD45 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
TM9SF3Q9HD45 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC24.07■■□□□ 1.44
TM9SF3Q9HD45 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC24.07■■□□□ 1.44
TM9SF3Q9HD45 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC24.07■■□□□ 1.44
TM9SF3Q9HD45 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
TM9SF3Q9HD45 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC24.07■■□□□ 1.44
TM9SF3Q9HD45 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
TM9SF3Q9HD45 AL449106.1-201ENST00000608517 1980 ntBASIC24.07■■□□□ 1.44
TM9SF3Q9HD45 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
TM9SF3Q9HD45 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC24.07■■□□□ 1.44
TM9SF3Q9HD45 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC24.06■■□□□ 1.44
TM9SF3Q9HD45 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC24.06■■□□□ 1.44
TM9SF3Q9HD45 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC24.06■■□□□ 1.44
TM9SF3Q9HD45 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
TM9SF3Q9HD45 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC24.06■■□□□ 1.44
TM9SF3Q9HD45 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
TM9SF3Q9HD45 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC24.06■■□□□ 1.44
TM9SF3Q9HD45 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
TM9SF3Q9HD45 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC24.06■■□□□ 1.44
TM9SF3Q9HD45 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
TM9SF3Q9HD45 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC24.05■■□□□ 1.44
TM9SF3Q9HD45 RNF146-205ENST00000477776 762 ntTSL 3 BASIC24.05■■□□□ 1.44
TM9SF3Q9HD45 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC24.05■■□□□ 1.44
TM9SF3Q9HD45 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
TM9SF3Q9HD45 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
TM9SF3Q9HD45 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
TM9SF3Q9HD45 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
TM9SF3Q9HD45 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
TM9SF3Q9HD45 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC24.02■■□□□ 1.44
TM9SF3Q9HD45 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC24.02■■□□□ 1.44
TM9SF3Q9HD45 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC24.02■■□□□ 1.44
TM9SF3Q9HD45 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
TM9SF3Q9HD45 AC239859.2-201ENST00000444165 318 ntBASIC24.02■■□□□ 1.44
TM9SF3Q9HD45 TK2-216ENST00000564917 1156 ntTSL 3 BASIC24.02■■□□□ 1.44
TM9SF3Q9HD45 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC24.01■■□□□ 1.43
TM9SF3Q9HD45 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC24.01■■□□□ 1.43
TM9SF3Q9HD45 AL356441.2-201ENST00000443009 864 ntBASIC24.01■■□□□ 1.43
TM9SF3Q9HD45 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
TM9SF3Q9HD45 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC24.01■■□□□ 1.43
TM9SF3Q9HD45 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
TM9SF3Q9HD45 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC24.01■■□□□ 1.43
TM9SF3Q9HD45 BX255925.1-201ENST00000566954 1854 ntBASIC24■■□□□ 1.43
TM9SF3Q9HD45 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
TM9SF3Q9HD45 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC24■■□□□ 1.43
TM9SF3Q9HD45 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
TM9SF3Q9HD45 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
TM9SF3Q9HD45 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC24■■□□□ 1.43
TM9SF3Q9HD45 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
TM9SF3Q9HD45 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC23.99■■□□□ 1.43
TM9SF3Q9HD45 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
TM9SF3Q9HD45 MTURN-203ENST00000409688 843 ntTSL 2 BASIC23.99■■□□□ 1.43
TM9SF3Q9HD45 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC23.99■■□□□ 1.43
TM9SF3Q9HD45 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC23.99■■□□□ 1.43
TM9SF3Q9HD45 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC23.99■■□□□ 1.43
TM9SF3Q9HD45 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
TM9SF3Q9HD45 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
TM9SF3Q9HD45 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
TM9SF3Q9HD45 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
TM9SF3Q9HD45 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC23.98■■□□□ 1.43
TM9SF3Q9HD45 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC23.98■■□□□ 1.43
TM9SF3Q9HD45 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
TM9SF3Q9HD45 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC23.98■■□□□ 1.43
TM9SF3Q9HD45 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
TM9SF3Q9HD45 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
TM9SF3Q9HD45 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC23.97■■□□□ 1.43
TM9SF3Q9HD45 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
TM9SF3Q9HD45 LINC01003-201ENST00000564834 1764 ntBASIC23.97■■□□□ 1.43
TM9SF3Q9HD45 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC23.96■■□□□ 1.43
TM9SF3Q9HD45 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC23.96■■□□□ 1.43
TM9SF3Q9HD45 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC23.96■■□□□ 1.43
TM9SF3Q9HD45 Z92544.1-202ENST00000571933 1220 ntBASIC23.96■■□□□ 1.43
TM9SF3Q9HD45 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC23.96■■□□□ 1.43
TM9SF3Q9HD45 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
TM9SF3Q9HD45 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC23.96■■□□□ 1.43
TM9SF3Q9HD45 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC23.95■■□□□ 1.42
TM9SF3Q9HD45 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC23.95■■□□□ 1.42
TM9SF3Q9HD45 KRT18P10-201ENST00000388836 1287 ntBASIC23.95■■□□□ 1.42
TM9SF3Q9HD45 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC23.95■■□□□ 1.42
TM9SF3Q9HD45 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC23.95■■□□□ 1.42
TM9SF3Q9HD45 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
TM9SF3Q9HD45 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC23.94■■□□□ 1.42
TM9SF3Q9HD45 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
TM9SF3Q9HD45 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms