Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC24.83■■□□□ 1.57
PCDH9Q9HC56 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC24.83■■□□□ 1.57
PCDH9Q9HC56 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
PCDH9Q9HC56 MOB2-207ENST00000614710 705 ntTSL 5 BASIC24.83■■□□□ 1.57
PCDH9Q9HC56 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.56
PCDH9Q9HC56 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.56
PCDH9Q9HC56 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC24.82■■□□□ 1.56
PCDH9Q9HC56 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
PCDH9Q9HC56 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
PCDH9Q9HC56 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC24.82■■□□□ 1.56
PCDH9Q9HC56 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
PCDH9Q9HC56 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC24.81■■□□□ 1.56
PCDH9Q9HC56 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
PCDH9Q9HC56 PKM-204ENST00000449901 2526 ntTSL 2 BASIC24.81■■□□□ 1.56
PCDH9Q9HC56 AC093323.1-202ENST00000635031 2045 ntBASIC24.81■■□□□ 1.56
PCDH9Q9HC56 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC24.81■■□□□ 1.56
PCDH9Q9HC56 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
PCDH9Q9HC56 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC24.8■■□□□ 1.56
PCDH9Q9HC56 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC24.79■■□□□ 1.56
PCDH9Q9HC56 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
PCDH9Q9HC56 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC24.79■■□□□ 1.56
PCDH9Q9HC56 HES4-202ENST00000428771 1040 ntTSL 2 BASIC24.79■■□□□ 1.56
PCDH9Q9HC56 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC24.79■■□□□ 1.56
PCDH9Q9HC56 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
PCDH9Q9HC56 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC24.78■■□□□ 1.56
PCDH9Q9HC56 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
PCDH9Q9HC56 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
PCDH9Q9HC56 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC24.78■■□□□ 1.56
PCDH9Q9HC56 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC24.78■■□□□ 1.56
PCDH9Q9HC56 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC24.78■■□□□ 1.56
PCDH9Q9HC56 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
PCDH9Q9HC56 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
PCDH9Q9HC56 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
PCDH9Q9HC56 ECEL1P2-201ENST00000461596 1295 ntBASIC24.77■■□□□ 1.56
PCDH9Q9HC56 HSD17B1P1-201ENST00000590052 955 ntBASIC24.77■■□□□ 1.56
PCDH9Q9HC56 MED17-227ENST00000640521 2047 ntTSL 5 BASIC24.77■■□□□ 1.56
PCDH9Q9HC56 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC24.77■■□□□ 1.56
PCDH9Q9HC56 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
PCDH9Q9HC56 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
PCDH9Q9HC56 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC24.76■■□□□ 1.55
PCDH9Q9HC56 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC24.76■■□□□ 1.55
PCDH9Q9HC56 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
PCDH9Q9HC56 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
PCDH9Q9HC56 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC24.76■■□□□ 1.55
PCDH9Q9HC56 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC24.76■■□□□ 1.55
PCDH9Q9HC56 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
PCDH9Q9HC56 AC022211.4-201ENST00000625094 2161 ntBASIC24.76■■□□□ 1.55
PCDH9Q9HC56 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
PCDH9Q9HC56 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC24.75■■□□□ 1.55
PCDH9Q9HC56 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
PCDH9Q9HC56 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
PCDH9Q9HC56 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
PCDH9Q9HC56 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
PCDH9Q9HC56 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC24.74■■□□□ 1.55
PCDH9Q9HC56 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC24.74■■□□□ 1.55
PCDH9Q9HC56 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
PCDH9Q9HC56 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
PCDH9Q9HC56 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
PCDH9Q9HC56 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
PCDH9Q9HC56 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC24.73■■□□□ 1.55
PCDH9Q9HC56 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
PCDH9Q9HC56 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
PCDH9Q9HC56 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC24.73■■□□□ 1.55
PCDH9Q9HC56 RNF126P1-201ENST00000567452 1320 ntBASIC24.73■■□□□ 1.55
PCDH9Q9HC56 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC24.73■■□□□ 1.55
PCDH9Q9HC56 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
PCDH9Q9HC56 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
PCDH9Q9HC56 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC24.72■■□□□ 1.55
PCDH9Q9HC56 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
PCDH9Q9HC56 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC24.72■■□□□ 1.55
PCDH9Q9HC56 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC24.72■■□□□ 1.55
PCDH9Q9HC56 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC24.72■■□□□ 1.55
PCDH9Q9HC56 SMPD5-203ENST00000639008 1464 ntBASIC24.71■■□□□ 1.55
PCDH9Q9HC56 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC24.71■■□□□ 1.55
PCDH9Q9HC56 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC24.71■■□□□ 1.55
PCDH9Q9HC56 AC025884.2-201ENST00000553429 711 ntBASIC24.71■■□□□ 1.55
PCDH9Q9HC56 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
PCDH9Q9HC56 AC138932.3-201ENST00000567634 1902 ntBASIC24.71■■□□□ 1.55
PCDH9Q9HC56 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
PCDH9Q9HC56 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC24.7■■□□□ 1.54
PCDH9Q9HC56 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
PCDH9Q9HC56 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC24.7■■□□□ 1.54
PCDH9Q9HC56 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
PCDH9Q9HC56 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC24.7■■□□□ 1.54
PCDH9Q9HC56 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC24.69■■□□□ 1.54
PCDH9Q9HC56 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
PCDH9Q9HC56 REST-210ENST00000638187 1334 ntTSL 5 BASIC24.69■■□□□ 1.54
PCDH9Q9HC56 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC24.69■■□□□ 1.54
PCDH9Q9HC56 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC24.69■■□□□ 1.54
PCDH9Q9HC56 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC24.69■■□□□ 1.54
PCDH9Q9HC56 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC24.68■■□□□ 1.54
PCDH9Q9HC56 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
PCDH9Q9HC56 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
PCDH9Q9HC56 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC24.67■■□□□ 1.54
PCDH9Q9HC56 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
PCDH9Q9HC56 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC24.67■■□□□ 1.54
PCDH9Q9HC56 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
PCDH9Q9HC56 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
PCDH9Q9HC56 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC24.67■■□□□ 1.54
PCDH9Q9HC56 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms