Protein–RNA interactions for Protein: Q9H3Q1

CDC42EP4, Cdc42 effector protein 4, humanhuman

Known RBP Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42EP4Q9H3Q1 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
CDC42EP4Q9H3Q1 LINC01124-201ENST00000409786 2117 ntBASIC24.44■■□□□ 1.5
CDC42EP4Q9H3Q1 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
CDC42EP4Q9H3Q1 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
CDC42EP4Q9H3Q1 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CDC42EP4Q9H3Q1 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC24.43■■□□□ 1.5
CDC42EP4Q9H3Q1 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC24.43■■□□□ 1.5
CDC42EP4Q9H3Q1 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
CDC42EP4Q9H3Q1 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC24.43■■□□□ 1.5
CDC42EP4Q9H3Q1 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC24.42■■□□□ 1.5
CDC42EP4Q9H3Q1 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC24.42■■□□□ 1.5
CDC42EP4Q9H3Q1 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC24.42■■□□□ 1.5
CDC42EP4Q9H3Q1 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CDC42EP4Q9H3Q1 AC148477.6-201ENST00000623746 465 ntBASIC24.42■■□□□ 1.5
CDC42EP4Q9H3Q1 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC24.42■■□□□ 1.5
CDC42EP4Q9H3Q1 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
CDC42EP4Q9H3Q1 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC24.42■■□□□ 1.5
CDC42EP4Q9H3Q1 EED-207ENST00000528180 1745 ntTSL 5 BASIC24.41■■□□□ 1.5
CDC42EP4Q9H3Q1 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC24.41■■□□□ 1.5
CDC42EP4Q9H3Q1 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC24.41■■□□□ 1.5
CDC42EP4Q9H3Q1 AC008813.1-201ENST00000536597 885 ntBASIC24.41■■□□□ 1.5
CDC42EP4Q9H3Q1 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC24.41■■□□□ 1.5
CDC42EP4Q9H3Q1 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
CDC42EP4Q9H3Q1 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC24.41■■□□□ 1.5
CDC42EP4Q9H3Q1 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC24.4■■□□□ 1.5
CDC42EP4Q9H3Q1 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
CDC42EP4Q9H3Q1 CHST11-202ENST00000546689 756 ntTSL 2 BASIC24.4■■□□□ 1.5
CDC42EP4Q9H3Q1 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC24.4■■□□□ 1.5
CDC42EP4Q9H3Q1 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
CDC42EP4Q9H3Q1 AL359258.2-201ENST00000564063 1566 ntBASIC24.4■■□□□ 1.5
CDC42EP4Q9H3Q1 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
CDC42EP4Q9H3Q1 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC24.4■■□□□ 1.5
CDC42EP4Q9H3Q1 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
CDC42EP4Q9H3Q1 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
CDC42EP4Q9H3Q1 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC24.39■■□□□ 1.5
CDC42EP4Q9H3Q1 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC24.39■■□□□ 1.5
CDC42EP4Q9H3Q1 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
CDC42EP4Q9H3Q1 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
CDC42EP4Q9H3Q1 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC24.39■■□□□ 1.49
CDC42EP4Q9H3Q1 LINC01971-201ENST00000617888 1048 ntBASIC24.39■■□□□ 1.49
CDC42EP4Q9H3Q1 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
CDC42EP4Q9H3Q1 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
CDC42EP4Q9H3Q1 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
CDC42EP4Q9H3Q1 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
CDC42EP4Q9H3Q1 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC24.38■■□□□ 1.49
CDC42EP4Q9H3Q1 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC24.38■■□□□ 1.49
CDC42EP4Q9H3Q1 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
CDC42EP4Q9H3Q1 AP003733.4-201ENST00000623785 1697 ntBASIC24.38■■□□□ 1.49
CDC42EP4Q9H3Q1 DUX4L13-201ENST00000554103 1267 ntBASIC24.38■■□□□ 1.49
CDC42EP4Q9H3Q1 DUX4L15-201ENST00000611059 1267 ntBASIC24.38■■□□□ 1.49
CDC42EP4Q9H3Q1 DUX4L23-201ENST00000615195 1269 ntBASIC24.38■■□□□ 1.49
CDC42EP4Q9H3Q1 DUX4L24-201ENST00000617576 1269 ntBASIC24.38■■□□□ 1.49
CDC42EP4Q9H3Q1 DUX4L22-201ENST00000618238 1269 ntBASIC24.38■■□□□ 1.49
CDC42EP4Q9H3Q1 DUX4L20-201ENST00000619712 1269 ntBASIC24.38■■□□□ 1.49
CDC42EP4Q9H3Q1 DUX4L21-201ENST00000622058 1269 ntBASIC24.38■■□□□ 1.49
CDC42EP4Q9H3Q1 DUX4L10-201ENST00000622460 1267 ntBASIC24.38■■□□□ 1.49
CDC42EP4Q9H3Q1 DUX4L25-201ENST00000624915 1269 ntBASIC24.38■■□□□ 1.49
CDC42EP4Q9H3Q1 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
CDC42EP4Q9H3Q1 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
CDC42EP4Q9H3Q1 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC24.38■■□□□ 1.49
CDC42EP4Q9H3Q1 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
CDC42EP4Q9H3Q1 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
CDC42EP4Q9H3Q1 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC24.37■■□□□ 1.49
CDC42EP4Q9H3Q1 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
CDC42EP4Q9H3Q1 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
CDC42EP4Q9H3Q1 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
CDC42EP4Q9H3Q1 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
CDC42EP4Q9H3Q1 HGH1-207ENST00000628266 258 ntTSL 5 BASIC24.36■■□□□ 1.49
CDC42EP4Q9H3Q1 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC24.36■■□□□ 1.49
CDC42EP4Q9H3Q1 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
CDC42EP4Q9H3Q1 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC24.35■■□□□ 1.49
CDC42EP4Q9H3Q1 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
CDC42EP4Q9H3Q1 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
CDC42EP4Q9H3Q1 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
CDC42EP4Q9H3Q1 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
CDC42EP4Q9H3Q1 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
CDC42EP4Q9H3Q1 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
CDC42EP4Q9H3Q1 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC24.35■■□□□ 1.49
CDC42EP4Q9H3Q1 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
CDC42EP4Q9H3Q1 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC24.35■■□□□ 1.49
CDC42EP4Q9H3Q1 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
CDC42EP4Q9H3Q1 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
CDC42EP4Q9H3Q1 SLC6A10P-202ENST00000431994 2058 ntBASIC24.34■■□□□ 1.49
CDC42EP4Q9H3Q1 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
CDC42EP4Q9H3Q1 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
CDC42EP4Q9H3Q1 AC097639.1-201ENST00000565519 1891 ntBASIC24.34■■□□□ 1.49
CDC42EP4Q9H3Q1 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.49
CDC42EP4Q9H3Q1 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
CDC42EP4Q9H3Q1 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
CDC42EP4Q9H3Q1 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
CDC42EP4Q9H3Q1 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
CDC42EP4Q9H3Q1 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC24.33■■□□□ 1.48
CDC42EP4Q9H3Q1 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC24.33■■□□□ 1.48
CDC42EP4Q9H3Q1 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
CDC42EP4Q9H3Q1 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC24.32■■□□□ 1.48
CDC42EP4Q9H3Q1 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
CDC42EP4Q9H3Q1 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
CDC42EP4Q9H3Q1 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
CDC42EP4Q9H3Q1 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC24.32■■□□□ 1.48
CDC42EP4Q9H3Q1 CHST11-203ENST00000547956 936 ntTSL 2 BASIC24.32■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms