Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC28AQ8IWP9 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC28AQ8IWP9 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC28AQ8IWP9 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC28AQ8IWP9 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC28AQ8IWP9 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC28AQ8IWP9 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
CCDC28AQ8IWP9 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC28AQ8IWP9 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC28AQ8IWP9 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC28AQ8IWP9 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC28AQ8IWP9 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC28AQ8IWP9 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC19.94■□□□□ 0.78
CCDC28AQ8IWP9 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC28AQ8IWP9 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
CCDC28AQ8IWP9 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC19.94■□□□□ 0.78
CCDC28AQ8IWP9 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC28AQ8IWP9 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC28AQ8IWP9 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC19.93■□□□□ 0.78
CCDC28AQ8IWP9 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC28AQ8IWP9 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC28AQ8IWP9 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC19.93■□□□□ 0.78
CCDC28AQ8IWP9 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC19.93■□□□□ 0.78
CCDC28AQ8IWP9 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC19.93■□□□□ 0.78
CCDC28AQ8IWP9 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC28AQ8IWP9 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC28AQ8IWP9 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC28AQ8IWP9 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC28AQ8IWP9 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC28AQ8IWP9 ME2-208ENST00000638937 2471 ntTSL 5 BASIC19.92■□□□□ 0.78
CCDC28AQ8IWP9 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
CCDC28AQ8IWP9 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC19.92■□□□□ 0.78
CCDC28AQ8IWP9 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
CCDC28AQ8IWP9 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC28AQ8IWP9 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC28AQ8IWP9 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC28AQ8IWP9 STK25-234ENST00000535007 2459 ntTSL 2 BASIC19.92■□□□□ 0.78
CCDC28AQ8IWP9 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC28AQ8IWP9 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
CCDC28AQ8IWP9 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC19.91■□□□□ 0.78
CCDC28AQ8IWP9 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC19.91■□□□□ 0.78
CCDC28AQ8IWP9 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC28AQ8IWP9 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC19.91■□□□□ 0.78
CCDC28AQ8IWP9 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC28AQ8IWP9 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC19.91■□□□□ 0.78
CCDC28AQ8IWP9 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC28AQ8IWP9 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC19.9■□□□□ 0.78
CCDC28AQ8IWP9 AC097639.1-201ENST00000565519 1891 ntBASIC19.9■□□□□ 0.78
CCDC28AQ8IWP9 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC28AQ8IWP9 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC19.9■□□□□ 0.78
CCDC28AQ8IWP9 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC28AQ8IWP9 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC28AQ8IWP9 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC28AQ8IWP9 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC28AQ8IWP9 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
CCDC28AQ8IWP9 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC28AQ8IWP9 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC28AQ8IWP9 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC28AQ8IWP9 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC19.89■□□□□ 0.77
CCDC28AQ8IWP9 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC19.89■□□□□ 0.77
CCDC28AQ8IWP9 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC28AQ8IWP9 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC19.88■□□□□ 0.77
CCDC28AQ8IWP9 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC28AQ8IWP9 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC28AQ8IWP9 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC19.88■□□□□ 0.77
CCDC28AQ8IWP9 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
CCDC28AQ8IWP9 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC28AQ8IWP9 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC28AQ8IWP9 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC28AQ8IWP9 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC28AQ8IWP9 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC28AQ8IWP9 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC28AQ8IWP9 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC28AQ8IWP9 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
CCDC28AQ8IWP9 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC19.86■□□□□ 0.77
CCDC28AQ8IWP9 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC28AQ8IWP9 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC28AQ8IWP9 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC28AQ8IWP9 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
CCDC28AQ8IWP9 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.86■□□□□ 0.77
CCDC28AQ8IWP9 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC28AQ8IWP9 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC19.85■□□□□ 0.77
CCDC28AQ8IWP9 AC138932.3-201ENST00000567634 1902 ntBASIC19.85■□□□□ 0.77
CCDC28AQ8IWP9 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC19.85■□□□□ 0.77
CCDC28AQ8IWP9 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC28AQ8IWP9 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC28AQ8IWP9 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC28AQ8IWP9 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC28AQ8IWP9 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC19.84■□□□□ 0.77
CCDC28AQ8IWP9 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC28AQ8IWP9 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC28AQ8IWP9 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.84■□□□□ 0.77
CCDC28AQ8IWP9 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC28AQ8IWP9 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC19.84■□□□□ 0.77
CCDC28AQ8IWP9 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
CCDC28AQ8IWP9 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC28AQ8IWP9 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
CCDC28AQ8IWP9 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC28AQ8IWP9 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
CCDC28AQ8IWP9 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 141.3 ms