Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC20.36■□□□□ 0.85
VPS13CQ709C8 AL117332.1-201ENST00000622628 974 ntBASIC20.36■□□□□ 0.85
VPS13CQ709C8 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC20.35■□□□□ 0.85
VPS13CQ709C8 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS13CQ709C8 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS13CQ709C8 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
VPS13CQ709C8 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC20.35■□□□□ 0.85
VPS13CQ709C8 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC20.35■□□□□ 0.85
VPS13CQ709C8 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC20.35■□□□□ 0.85
VPS13CQ709C8 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC20.35■□□□□ 0.85
VPS13CQ709C8 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
VPS13CQ709C8 AC092666.2-201ENST00000613287 246 ntBASIC20.35■□□□□ 0.85
VPS13CQ709C8 AP002414.2-202ENST00000590929 1450 ntBASIC20.35■□□□□ 0.85
VPS13CQ709C8 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS13CQ709C8 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
VPS13CQ709C8 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
VPS13CQ709C8 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VPS13CQ709C8 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC20.34■□□□□ 0.85
VPS13CQ709C8 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC20.34■□□□□ 0.85
VPS13CQ709C8 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.34■□□□□ 0.85
VPS13CQ709C8 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VPS13CQ709C8 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
VPS13CQ709C8 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
VPS13CQ709C8 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
VPS13CQ709C8 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
VPS13CQ709C8 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
VPS13CQ709C8 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.85
VPS13CQ709C8 BX255925.1-201ENST00000566954 1854 ntBASIC20.33■□□□□ 0.85
VPS13CQ709C8 AC092028.1-203ENST00000608262 953 ntBASIC20.33■□□□□ 0.84
VPS13CQ709C8 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC20.33■□□□□ 0.84
VPS13CQ709C8 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
VPS13CQ709C8 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
VPS13CQ709C8 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
VPS13CQ709C8 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC20.33■□□□□ 0.84
VPS13CQ709C8 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VPS13CQ709C8 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VPS13CQ709C8 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VPS13CQ709C8 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
VPS13CQ709C8 AL512631.2-201ENST00000604634 923 ntBASIC20.32■□□□□ 0.84
VPS13CQ709C8 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VPS13CQ709C8 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC20.32■□□□□ 0.84
VPS13CQ709C8 ZNRF2P3-201ENST00000424200 374 ntBASIC20.32■□□□□ 0.84
VPS13CQ709C8 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VPS13CQ709C8 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC20.32■□□□□ 0.84
VPS13CQ709C8 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VPS13CQ709C8 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS13CQ709C8 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
VPS13CQ709C8 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS13CQ709C8 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS13CQ709C8 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
VPS13CQ709C8 AC096631.2-201ENST00000436136 790 ntBASIC20.31■□□□□ 0.84
VPS13CQ709C8 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
VPS13CQ709C8 AC021242.3-201ENST00000607598 1377 ntBASIC20.31■□□□□ 0.84
VPS13CQ709C8 BX664725.1-201ENST00000438252 379 ntBASIC20.31■□□□□ 0.84
VPS13CQ709C8 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
VPS13CQ709C8 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC20.3■□□□□ 0.84
VPS13CQ709C8 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
VPS13CQ709C8 TRIR-202ENST00000588213 841 ntTSL 3 BASIC20.3■□□□□ 0.84
VPS13CQ709C8 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC20.3■□□□□ 0.84
VPS13CQ709C8 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS13CQ709C8 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VPS13CQ709C8 NALT1-201ENST00000429224 738 ntTSL 5 BASIC20.3■□□□□ 0.84
VPS13CQ709C8 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VPS13CQ709C8 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC20.29■□□□□ 0.84
VPS13CQ709C8 AC133561.4-201ENST00000566112 224 ntBASIC20.29■□□□□ 0.84
VPS13CQ709C8 AC137630.3-201ENST00000607245 391 ntBASIC20.29■□□□□ 0.84
VPS13CQ709C8 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VPS13CQ709C8 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VPS13CQ709C8 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
VPS13CQ709C8 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC20.28■□□□□ 0.84
VPS13CQ709C8 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC20.28■□□□□ 0.84
VPS13CQ709C8 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC20.28■□□□□ 0.84
VPS13CQ709C8 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC20.28■□□□□ 0.84
VPS13CQ709C8 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC20.28■□□□□ 0.84
VPS13CQ709C8 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC20.28■□□□□ 0.84
VPS13CQ709C8 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
VPS13CQ709C8 SNAI3-AS1-204ENST00000567997 2048 ntBASIC20.27■□□□□ 0.84
VPS13CQ709C8 SRR-208ENST00000576848 588 ntTSL 4 BASIC20.27■□□□□ 0.84
VPS13CQ709C8 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC20.27■□□□□ 0.84
VPS13CQ709C8 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
VPS13CQ709C8 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
VPS13CQ709C8 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC20.26■□□□□ 0.83
VPS13CQ709C8 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC20.26■□□□□ 0.83
VPS13CQ709C8 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS13CQ709C8 EBPL-204ENST00000378272 766 ntTSL 3 BASIC20.26■□□□□ 0.83
VPS13CQ709C8 AC026271.2-201ENST00000428091 497 ntBASIC20.26■□□□□ 0.83
VPS13CQ709C8 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC20.26■□□□□ 0.83
VPS13CQ709C8 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
VPS13CQ709C8 AC135279.3-201ENST00000610945 1311 ntBASIC20.26■□□□□ 0.83
VPS13CQ709C8 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC20.26■□□□□ 0.83
VPS13CQ709C8 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
VPS13CQ709C8 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC20.25■□□□□ 0.83
VPS13CQ709C8 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC20.25■□□□□ 0.83
VPS13CQ709C8 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS13CQ709C8 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
VPS13CQ709C8 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC20.25■□□□□ 0.83
VPS13CQ709C8 TSPY9P-201ENST00000440215 945 ntBASIC20.25■□□□□ 0.83
VPS13CQ709C8 TSPY11P-201ENST00000442607 1045 ntBASIC20.25■□□□□ 0.83
VPS13CQ709C8 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS13CQ709C8 KRT18P24-201ENST00000344739 1156 ntBASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms