Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
CTR9Q6PD62 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
CTR9Q6PD62 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC28.67■■■□□ 2.18
CTR9Q6PD62 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
CTR9Q6PD62 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC28.67■■■□□ 2.18
CTR9Q6PD62 AC087393.1-201ENST00000582896 145 ntBASIC28.67■■■□□ 2.18
CTR9Q6PD62 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC28.67■■■□□ 2.18
CTR9Q6PD62 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC28.67■■■□□ 2.18
CTR9Q6PD62 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
CTR9Q6PD62 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
CTR9Q6PD62 RPS2P7-201ENST00000447334 885 ntBASIC28.66■■■□□ 2.18
CTR9Q6PD62 AC074183.2-201ENST00000623112 922 ntBASIC28.66■■■□□ 2.18
CTR9Q6PD62 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
CTR9Q6PD62 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC28.65■■■□□ 2.18
CTR9Q6PD62 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
CTR9Q6PD62 BEX3-202ENST00000372634 753 ntTSL 2 BASIC28.65■■■□□ 2.18
CTR9Q6PD62 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC28.65■■■□□ 2.18
CTR9Q6PD62 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC28.65■■■□□ 2.18
CTR9Q6PD62 RARRES2P1-201ENST00000474487 481 ntBASIC28.65■■■□□ 2.18
CTR9Q6PD62 HYI-210ENST00000486909 905 ntTSL 5 BASIC28.65■■■□□ 2.18
CTR9Q6PD62 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC28.65■■■□□ 2.18
CTR9Q6PD62 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC28.65■■■□□ 2.18
CTR9Q6PD62 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
CTR9Q6PD62 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC28.65■■■□□ 2.18
CTR9Q6PD62 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
CTR9Q6PD62 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC28.64■■■□□ 2.18
CTR9Q6PD62 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC28.64■■■□□ 2.18
CTR9Q6PD62 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC28.64■■■□□ 2.17
CTR9Q6PD62 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC28.63■■■□□ 2.17
CTR9Q6PD62 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
CTR9Q6PD62 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
CTR9Q6PD62 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC28.62■■■□□ 2.17
CTR9Q6PD62 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
CTR9Q6PD62 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC28.62■■■□□ 2.17
CTR9Q6PD62 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
CTR9Q6PD62 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC28.61■■■□□ 2.17
CTR9Q6PD62 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
CTR9Q6PD62 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
CTR9Q6PD62 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
CTR9Q6PD62 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC28.6■■■□□ 2.17
CTR9Q6PD62 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
CTR9Q6PD62 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC28.59■■■□□ 2.17
CTR9Q6PD62 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC28.59■■■□□ 2.17
CTR9Q6PD62 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
CTR9Q6PD62 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
CTR9Q6PD62 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC28.59■■■□□ 2.17
CTR9Q6PD62 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
CTR9Q6PD62 IDNK-201ENST00000376417 511 ntTSL 5 BASIC28.58■■■□□ 2.17
CTR9Q6PD62 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
CTR9Q6PD62 AC103834.1-201ENST00000520383 144 ntBASIC28.58■■■□□ 2.17
CTR9Q6PD62 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC28.58■■■□□ 2.17
CTR9Q6PD62 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
CTR9Q6PD62 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
CTR9Q6PD62 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC28.57■■■□□ 2.16
CTR9Q6PD62 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
CTR9Q6PD62 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC28.57■■■□□ 2.16
CTR9Q6PD62 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC28.57■■■□□ 2.16
CTR9Q6PD62 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
CTR9Q6PD62 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC28.56■■■□□ 2.16
CTR9Q6PD62 LONRF2P2-201ENST00000439212 571 ntBASIC28.56■■■□□ 2.16
CTR9Q6PD62 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC28.56■■■□□ 2.16
CTR9Q6PD62 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC28.55■■■□□ 2.16
CTR9Q6PD62 KRT18P10-201ENST00000388836 1287 ntBASIC28.55■■■□□ 2.16
CTR9Q6PD62 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC28.55■■■□□ 2.16
CTR9Q6PD62 MTX2-204ENST00000443241 799 ntTSL 3 BASIC28.55■■■□□ 2.16
CTR9Q6PD62 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
CTR9Q6PD62 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC28.55■■■□□ 2.16
CTR9Q6PD62 KRT8P33-201ENST00000508125 1423 ntBASIC28.54■■■□□ 2.16
CTR9Q6PD62 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
CTR9Q6PD62 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
CTR9Q6PD62 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
CTR9Q6PD62 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
CTR9Q6PD62 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
CTR9Q6PD62 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC28.53■■■□□ 2.16
CTR9Q6PD62 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
CTR9Q6PD62 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC28.53■■■□□ 2.16
CTR9Q6PD62 AC019171.1-201ENST00000601251 1056 ntBASIC28.53■■■□□ 2.16
CTR9Q6PD62 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
CTR9Q6PD62 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC28.52■■■□□ 2.16
CTR9Q6PD62 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC28.52■■■□□ 2.16
CTR9Q6PD62 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC28.52■■■□□ 2.16
CTR9Q6PD62 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC28.51■■■□□ 2.15
CTR9Q6PD62 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
CTR9Q6PD62 ERN1-208ENST00000606895 2068 ntBASIC28.51■■■□□ 2.15
CTR9Q6PD62 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC28.51■■■□□ 2.15
CTR9Q6PD62 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC28.51■■■□□ 2.15
CTR9Q6PD62 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
CTR9Q6PD62 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
CTR9Q6PD62 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
CTR9Q6PD62 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC28.5■■■□□ 2.15
CTR9Q6PD62 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
CTR9Q6PD62 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC28.5■■■□□ 2.15
CTR9Q6PD62 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC28.5■■■□□ 2.15
CTR9Q6PD62 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
CTR9Q6PD62 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
CTR9Q6PD62 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
CTR9Q6PD62 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
CTR9Q6PD62 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
CTR9Q6PD62 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
CTR9Q6PD62 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms