Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VPS13DQ5THJ4 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VPS13DQ5THJ4 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS13DQ5THJ4 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS13DQ5THJ4 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VPS13DQ5THJ4 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS13DQ5THJ4 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC16.5■□□□□ 0.23
VPS13DQ5THJ4 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
VPS13DQ5THJ4 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC16.5■□□□□ 0.23
VPS13DQ5THJ4 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC16.5■□□□□ 0.23
VPS13DQ5THJ4 AC021242.3-201ENST00000607598 1377 ntBASIC16.5■□□□□ 0.23
VPS13DQ5THJ4 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
VPS13DQ5THJ4 BX255925.1-201ENST00000566954 1854 ntBASIC16.49■□□□□ 0.23
VPS13DQ5THJ4 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VPS13DQ5THJ4 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
VPS13DQ5THJ4 AC092028.1-203ENST00000608262 953 ntBASIC16.49■□□□□ 0.23
VPS13DQ5THJ4 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC16.48■□□□□ 0.23
VPS13DQ5THJ4 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC16.48■□□□□ 0.23
VPS13DQ5THJ4 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS13DQ5THJ4 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS13DQ5THJ4 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC16.48■□□□□ 0.23
VPS13DQ5THJ4 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS13DQ5THJ4 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS13DQ5THJ4 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VPS13DQ5THJ4 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS13DQ5THJ4 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
VPS13DQ5THJ4 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS13DQ5THJ4 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VPS13DQ5THJ4 AL117332.1-201ENST00000622628 974 ntBASIC16.47■□□□□ 0.23
VPS13DQ5THJ4 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS13DQ5THJ4 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS13DQ5THJ4 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
VPS13DQ5THJ4 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS13DQ5THJ4 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS13DQ5THJ4 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS13DQ5THJ4 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC16.47■□□□□ 0.23
VPS13DQ5THJ4 AL139246.5-201ENST00000606645 996 ntBASIC16.47■□□□□ 0.23
VPS13DQ5THJ4 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
VPS13DQ5THJ4 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
VPS13DQ5THJ4 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS13DQ5THJ4 AC120024.1-201ENST00000562672 995 ntBASIC16.46■□□□□ 0.23
VPS13DQ5THJ4 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.22
VPS13DQ5THJ4 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC16.45■□□□□ 0.22
VPS13DQ5THJ4 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC16.45■□□□□ 0.22
VPS13DQ5THJ4 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS13DQ5THJ4 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
VPS13DQ5THJ4 BX664725.1-201ENST00000438252 379 ntBASIC16.45■□□□□ 0.22
VPS13DQ5THJ4 AL512631.2-201ENST00000604634 923 ntBASIC16.45■□□□□ 0.22
VPS13DQ5THJ4 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC16.45■□□□□ 0.22
VPS13DQ5THJ4 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
VPS13DQ5THJ4 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
VPS13DQ5THJ4 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VPS13DQ5THJ4 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VPS13DQ5THJ4 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS13DQ5THJ4 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS13DQ5THJ4 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC16.44■□□□□ 0.22
VPS13DQ5THJ4 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS13DQ5THJ4 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC16.44■□□□□ 0.22
VPS13DQ5THJ4 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC16.44■□□□□ 0.22
VPS13DQ5THJ4 KRT18P24-201ENST00000344739 1156 ntBASIC16.44■□□□□ 0.22
VPS13DQ5THJ4 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS13DQ5THJ4 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS13DQ5THJ4 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS13DQ5THJ4 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VPS13DQ5THJ4 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VPS13DQ5THJ4 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC16.43■□□□□ 0.22
VPS13DQ5THJ4 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC16.43■□□□□ 0.22
VPS13DQ5THJ4 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC16.43■□□□□ 0.22
VPS13DQ5THJ4 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC16.43■□□□□ 0.22
VPS13DQ5THJ4 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC16.43■□□□□ 0.22
VPS13DQ5THJ4 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VPS13DQ5THJ4 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC16.42■□□□□ 0.22
VPS13DQ5THJ4 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VPS13DQ5THJ4 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
VPS13DQ5THJ4 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
VPS13DQ5THJ4 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VPS13DQ5THJ4 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC16.42■□□□□ 0.22
VPS13DQ5THJ4 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC16.42■□□□□ 0.22
VPS13DQ5THJ4 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC16.41■□□□□ 0.22
VPS13DQ5THJ4 KRT16P3-201ENST00000439127 1283 ntBASIC16.41■□□□□ 0.22
VPS13DQ5THJ4 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS13DQ5THJ4 MIR4466-201ENST00000606121 54 ntBASIC16.41■□□□□ 0.22
VPS13DQ5THJ4 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
VPS13DQ5THJ4 LINC01003-201ENST00000564834 1764 ntBASIC16.41■□□□□ 0.22
VPS13DQ5THJ4 SENP5-202ENST00000419026 973 ntTSL 3 BASIC16.41■□□□□ 0.22
VPS13DQ5THJ4 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC16.4■□□□□ 0.22
VPS13DQ5THJ4 MIR4281-201ENST00000580852 62 ntBASIC16.4■□□□□ 0.22
VPS13DQ5THJ4 AC110285.6-201ENST00000617652 491 ntBASIC16.4■□□□□ 0.22
VPS13DQ5THJ4 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC16.4■□□□□ 0.22
VPS13DQ5THJ4 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS13DQ5THJ4 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS13DQ5THJ4 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VPS13DQ5THJ4 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VPS13DQ5THJ4 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
VPS13DQ5THJ4 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS13DQ5THJ4 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC16.4■□□□□ 0.22
VPS13DQ5THJ4 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS13DQ5THJ4 AL136116.3-201ENST00000402907 1138 ntBASIC16.4■□□□□ 0.22
VPS13DQ5THJ4 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC16.4■□□□□ 0.22
VPS13DQ5THJ4 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 10.4 ms