Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
RNF4P78317 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
RNF4P78317 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
RNF4P78317 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC22.31■■□□□ 1.16
RNF4P78317 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
RNF4P78317 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC22.31■■□□□ 1.16
RNF4P78317 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
RNF4P78317 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
RNF4P78317 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
RNF4P78317 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
RNF4P78317 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC22.3■■□□□ 1.16
RNF4P78317 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC22.3■■□□□ 1.16
RNF4P78317 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
RNF4P78317 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
RNF4P78317 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC22.29■■□□□ 1.16
RNF4P78317 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC22.29■■□□□ 1.16
RNF4P78317 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
RNF4P78317 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
RNF4P78317 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC22.28■■□□□ 1.16
RNF4P78317 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
RNF4P78317 KRT18P10-201ENST00000388836 1287 ntBASIC22.28■■□□□ 1.16
RNF4P78317 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
RNF4P78317 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC22.28■■□□□ 1.16
RNF4P78317 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC22.28■■□□□ 1.16
RNF4P78317 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC22.28■■□□□ 1.16
RNF4P78317 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC22.28■■□□□ 1.16
RNF4P78317 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC22.27■■□□□ 1.16
RNF4P78317 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
RNF4P78317 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
RNF4P78317 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
RNF4P78317 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
RNF4P78317 HYI-210ENST00000486909 905 ntTSL 5 BASIC22.27■■□□□ 1.16
RNF4P78317 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
RNF4P78317 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
RNF4P78317 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC22.27■■□□□ 1.16
RNF4P78317 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC22.26■■□□□ 1.15
RNF4P78317 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
RNF4P78317 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
RNF4P78317 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
RNF4P78317 AC139795.1-202ENST00000500444 432 ntBASIC22.26■■□□□ 1.15
RNF4P78317 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC22.26■■□□□ 1.15
RNF4P78317 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
RNF4P78317 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC22.26■■□□□ 1.15
RNF4P78317 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
RNF4P78317 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
RNF4P78317 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC22.25■■□□□ 1.15
RNF4P78317 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC22.25■■□□□ 1.15
RNF4P78317 BHLHE23-202ENST00000612929 1109 ntBASIC22.25■■□□□ 1.15
RNF4P78317 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
RNF4P78317 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
RNF4P78317 AC092803.2-201ENST00000564287 1899 ntBASIC22.24■■□□□ 1.15
RNF4P78317 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC22.24■■□□□ 1.15
RNF4P78317 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
RNF4P78317 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC22.24■■□□□ 1.15
RNF4P78317 RPS2P7-201ENST00000447334 885 ntBASIC22.24■■□□□ 1.15
RNF4P78317 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC22.24■■□□□ 1.15
RNF4P78317 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
RNF4P78317 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
RNF4P78317 ERN1-208ENST00000606895 2068 ntBASIC22.24■■□□□ 1.15
RNF4P78317 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
RNF4P78317 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
RNF4P78317 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
RNF4P78317 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
RNF4P78317 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
RNF4P78317 AC087393.1-201ENST00000582896 145 ntBASIC22.23■■□□□ 1.15
RNF4P78317 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
RNF4P78317 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC22.23■■□□□ 1.15
RNF4P78317 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
RNF4P78317 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
RNF4P78317 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC22.22■■□□□ 1.15
RNF4P78317 AC074183.2-201ENST00000623112 922 ntBASIC22.22■■□□□ 1.15
RNF4P78317 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
RNF4P78317 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
RNF4P78317 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
RNF4P78317 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC22.21■■□□□ 1.15
RNF4P78317 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
RNF4P78317 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
RNF4P78317 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
RNF4P78317 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
RNF4P78317 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC22.2■■□□□ 1.14
RNF4P78317 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
RNF4P78317 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
RNF4P78317 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
RNF4P78317 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC22.2■■□□□ 1.14
RNF4P78317 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
RNF4P78317 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC22.2■■□□□ 1.14
RNF4P78317 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RNF4P78317 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC22.19■■□□□ 1.14
RNF4P78317 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RNF4P78317 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC22.19■■□□□ 1.14
RNF4P78317 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RNF4P78317 SNAI3-AS1-204ENST00000567997 2048 ntBASIC22.19■■□□□ 1.14
RNF4P78317 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC22.18■■□□□ 1.14
RNF4P78317 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC22.18■■□□□ 1.14
RNF4P78317 AC010501.1-201ENST00000606270 1962 ntBASIC22.18■■□□□ 1.14
RNF4P78317 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC22.18■■□□□ 1.14
RNF4P78317 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC22.17■■□□□ 1.14
RNF4P78317 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
RNF4P78317 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC22.17■■□□□ 1.14
RNF4P78317 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC22.17■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms