Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
NKX2-1P43699 EED-207ENST00000528180 1745 ntTSL 5 BASIC19.54■□□□□ 0.72
NKX2-1P43699 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
NKX2-1P43699 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
NKX2-1P43699 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
NKX2-1P43699 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
NKX2-1P43699 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
NKX2-1P43699 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC19.53■□□□□ 0.72
NKX2-1P43699 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC19.53■□□□□ 0.72
NKX2-1P43699 DUX4L28-201ENST00000623687 678 ntBASIC19.53■□□□□ 0.72
NKX2-1P43699 AP003733.4-201ENST00000623785 1697 ntBASIC19.52■□□□□ 0.72
NKX2-1P43699 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
NKX2-1P43699 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC19.52■□□□□ 0.72
NKX2-1P43699 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC19.52■□□□□ 0.72
NKX2-1P43699 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC19.52■□□□□ 0.71
NKX2-1P43699 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.71
NKX2-1P43699 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
NKX2-1P43699 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC19.52■□□□□ 0.71
NKX2-1P43699 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
NKX2-1P43699 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
NKX2-1P43699 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
NKX2-1P43699 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
NKX2-1P43699 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
NKX2-1P43699 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC19.51■□□□□ 0.71
NKX2-1P43699 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
NKX2-1P43699 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
NKX2-1P43699 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
NKX2-1P43699 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
NKX2-1P43699 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC19.51■□□□□ 0.71
NKX2-1P43699 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
NKX2-1P43699 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
NKX2-1P43699 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
NKX2-1P43699 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC19.5■□□□□ 0.71
NKX2-1P43699 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
NKX2-1P43699 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
NKX2-1P43699 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
NKX2-1P43699 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC19.5■□□□□ 0.71
NKX2-1P43699 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
NKX2-1P43699 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC19.49■□□□□ 0.71
NKX2-1P43699 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
NKX2-1P43699 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
NKX2-1P43699 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
NKX2-1P43699 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC19.49■□□□□ 0.71
NKX2-1P43699 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
NKX2-1P43699 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC19.49■□□□□ 0.71
NKX2-1P43699 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC19.49■□□□□ 0.71
NKX2-1P43699 RPS2-210ENST00000530225 765 ntTSL 2 BASIC19.49■□□□□ 0.71
NKX2-1P43699 AP006261.1-201ENST00000584783 668 ntBASIC19.49■□□□□ 0.71
NKX2-1P43699 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
NKX2-1P43699 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
NKX2-1P43699 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
NKX2-1P43699 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
NKX2-1P43699 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
NKX2-1P43699 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC19.48■□□□□ 0.71
NKX2-1P43699 MIR3665-201ENST00000578708 105 ntBASIC19.48■□□□□ 0.71
NKX2-1P43699 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC19.48■□□□□ 0.71
NKX2-1P43699 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
NKX2-1P43699 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
NKX2-1P43699 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
NKX2-1P43699 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
NKX2-1P43699 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
NKX2-1P43699 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
NKX2-1P43699 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
NKX2-1P43699 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
NKX2-1P43699 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
NKX2-1P43699 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
NKX2-1P43699 CASK-201ENST00000378154 2494 ntTSL 5 BASIC19.47■□□□□ 0.71
NKX2-1P43699 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
NKX2-1P43699 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
NKX2-1P43699 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
NKX2-1P43699 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC19.46■□□□□ 0.71
NKX2-1P43699 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC19.46■□□□□ 0.71
NKX2-1P43699 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
NKX2-1P43699 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
NKX2-1P43699 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
NKX2-1P43699 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
NKX2-1P43699 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
NKX2-1P43699 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
NKX2-1P43699 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
NKX2-1P43699 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
NKX2-1P43699 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
NKX2-1P43699 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NKX2-1P43699 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC19.45■□□□□ 0.7
NKX2-1P43699 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
NKX2-1P43699 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
NKX2-1P43699 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC19.45■□□□□ 0.7
NKX2-1P43699 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
NKX2-1P43699 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NKX2-1P43699 AC097639.1-201ENST00000565519 1891 ntBASIC19.45■□□□□ 0.7
NKX2-1P43699 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NKX2-1P43699 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NKX2-1P43699 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NKX2-1P43699 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
NKX2-1P43699 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
NKX2-1P43699 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
NKX2-1P43699 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
NKX2-1P43699 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC19.44■□□□□ 0.7
NKX2-1P43699 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
NKX2-1P43699 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
NKX2-1P43699 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms