Protein–RNA interactions for Protein: P21580

TNFAIP3, Tumor necrosis factor alpha-induced protein 3, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFAIP3P21580 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
TNFAIP3P21580 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC25.7■■□□□ 1.7
TNFAIP3P21580 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC25.69■■□□□ 1.7
TNFAIP3P21580 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC25.69■■□□□ 1.7
TNFAIP3P21580 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
TNFAIP3P21580 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
TNFAIP3P21580 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC25.69■■□□□ 1.7
TNFAIP3P21580 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
TNFAIP3P21580 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC25.68■■□□□ 1.7
TNFAIP3P21580 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC25.68■■□□□ 1.7
TNFAIP3P21580 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
TNFAIP3P21580 SNAI3-AS1-204ENST00000567997 2048 ntBASIC25.68■■□□□ 1.7
TNFAIP3P21580 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
TNFAIP3P21580 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
TNFAIP3P21580 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
TNFAIP3P21580 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
TNFAIP3P21580 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
TNFAIP3P21580 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
TNFAIP3P21580 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC25.67■■□□□ 1.7
TNFAIP3P21580 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC25.67■■□□□ 1.7
TNFAIP3P21580 PFN2-211ENST00000489155 636 ntTSL 4 BASIC25.67■■□□□ 1.7
TNFAIP3P21580 AC025884.2-201ENST00000553429 711 ntBASIC25.67■■□□□ 1.7
TNFAIP3P21580 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC25.67■■□□□ 1.7
TNFAIP3P21580 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC25.66■■□□□ 1.7
TNFAIP3P21580 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
TNFAIP3P21580 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
TNFAIP3P21580 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
TNFAIP3P21580 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
TNFAIP3P21580 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC25.65■■□□□ 1.7
TNFAIP3P21580 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC25.65■■□□□ 1.7
TNFAIP3P21580 SMPD5-203ENST00000639008 1464 ntBASIC25.65■■□□□ 1.7
TNFAIP3P21580 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
TNFAIP3P21580 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
TNFAIP3P21580 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
TNFAIP3P21580 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
TNFAIP3P21580 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
TNFAIP3P21580 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
TNFAIP3P21580 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC25.63■■□□□ 1.69
TNFAIP3P21580 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
TNFAIP3P21580 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
TNFAIP3P21580 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC25.63■■□□□ 1.69
TNFAIP3P21580 MIR3960-201ENST00000583311 91 ntBASIC25.62■■□□□ 1.69
TNFAIP3P21580 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC25.62■■□□□ 1.69
TNFAIP3P21580 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC25.62■■□□□ 1.69
TNFAIP3P21580 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC25.62■■□□□ 1.69
TNFAIP3P21580 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
TNFAIP3P21580 AC142381.3-201ENST00000568208 1670 ntBASIC25.61■■□□□ 1.69
TNFAIP3P21580 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
TNFAIP3P21580 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC25.61■■□□□ 1.69
TNFAIP3P21580 AC092296.2-201ENST00000589470 999 ntBASIC25.61■■□□□ 1.69
TNFAIP3P21580 AC022413.1-201ENST00000624602 984 ntBASIC25.61■■□□□ 1.69
TNFAIP3P21580 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
TNFAIP3P21580 AC022211.4-201ENST00000625094 2161 ntBASIC25.61■■□□□ 1.69
TNFAIP3P21580 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
TNFAIP3P21580 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC25.6■■□□□ 1.69
TNFAIP3P21580 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC25.6■■□□□ 1.69
TNFAIP3P21580 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
TNFAIP3P21580 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC25.6■■□□□ 1.69
TNFAIP3P21580 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
TNFAIP3P21580 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC25.6■■□□□ 1.69
TNFAIP3P21580 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
TNFAIP3P21580 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
TNFAIP3P21580 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
TNFAIP3P21580 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC25.59■■□□□ 1.69
TNFAIP3P21580 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC25.59■■□□□ 1.69
TNFAIP3P21580 SRP68-213ENST00000629930 165 ntTSL 5 BASIC25.59■■□□□ 1.69
TNFAIP3P21580 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
TNFAIP3P21580 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC25.59■■□□□ 1.69
TNFAIP3P21580 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
TNFAIP3P21580 MED17-227ENST00000640521 2047 ntTSL 5 BASIC25.59■■□□□ 1.69
TNFAIP3P21580 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC25.59■■□□□ 1.69
TNFAIP3P21580 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC25.59■■□□□ 1.69
TNFAIP3P21580 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC25.58■■□□□ 1.69
TNFAIP3P21580 CEP120-209ENST00000515110 606 ntTSL 3 BASIC25.57■■□□□ 1.68
TNFAIP3P21580 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
TNFAIP3P21580 AC097639.1-201ENST00000565519 1891 ntBASIC25.57■■□□□ 1.68
TNFAIP3P21580 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
TNFAIP3P21580 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
TNFAIP3P21580 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
TNFAIP3P21580 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC25.56■■□□□ 1.68
TNFAIP3P21580 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
TNFAIP3P21580 ECEL1P2-201ENST00000461596 1295 ntBASIC25.56■■□□□ 1.68
TNFAIP3P21580 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC25.56■■□□□ 1.68
TNFAIP3P21580 MBP-237ENST00000579129 1052 ntTSL 5 BASIC25.56■■□□□ 1.68
TNFAIP3P21580 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
TNFAIP3P21580 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
TNFAIP3P21580 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC25.55■■□□□ 1.68
TNFAIP3P21580 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC25.55■■□□□ 1.68
TNFAIP3P21580 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC25.55■■□□□ 1.68
TNFAIP3P21580 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
TNFAIP3P21580 REST-210ENST00000638187 1334 ntTSL 5 BASIC25.55■■□□□ 1.68
TNFAIP3P21580 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC25.54■■□□□ 1.68
TNFAIP3P21580 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC25.54■■□□□ 1.68
TNFAIP3P21580 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC25.54■■□□□ 1.68
TNFAIP3P21580 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
TNFAIP3P21580 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
TNFAIP3P21580 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC25.53■■□□□ 1.68
TNFAIP3P21580 AC138932.3-201ENST00000567634 1902 ntBASIC25.53■■□□□ 1.68
TNFAIP3P21580 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
TNFAIP3P21580 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC25.53■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms