Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
MSH3P20585 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC23.88■■□□□ 1.41
MSH3P20585 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
MSH3P20585 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC23.87■■□□□ 1.41
MSH3P20585 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
MSH3P20585 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC23.87■■□□□ 1.41
MSH3P20585 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
MSH3P20585 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC23.87■■□□□ 1.41
MSH3P20585 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC23.87■■□□□ 1.41
MSH3P20585 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC23.87■■□□□ 1.41
MSH3P20585 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC23.87■■□□□ 1.41
MSH3P20585 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC23.86■■□□□ 1.41
MSH3P20585 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
MSH3P20585 KRT18P60-201ENST00000312876 1297 ntBASIC23.86■■□□□ 1.41
MSH3P20585 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC23.86■■□□□ 1.41
MSH3P20585 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC23.86■■□□□ 1.41
MSH3P20585 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
MSH3P20585 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
MSH3P20585 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC23.85■■□□□ 1.41
MSH3P20585 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
MSH3P20585 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
MSH3P20585 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC23.84■■□□□ 1.41
MSH3P20585 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
MSH3P20585 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC23.84■■□□□ 1.41
MSH3P20585 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
MSH3P20585 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
MSH3P20585 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
MSH3P20585 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
MSH3P20585 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
MSH3P20585 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC23.83■■□□□ 1.41
MSH3P20585 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC23.83■■□□□ 1.41
MSH3P20585 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
MSH3P20585 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC23.83■■□□□ 1.4
MSH3P20585 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
MSH3P20585 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC23.82■■□□□ 1.4
MSH3P20585 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC23.82■■□□□ 1.4
MSH3P20585 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
MSH3P20585 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC23.82■■□□□ 1.4
MSH3P20585 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
MSH3P20585 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
MSH3P20585 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
MSH3P20585 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
MSH3P20585 ERN1-208ENST00000606895 2068 ntBASIC23.82■■□□□ 1.4
MSH3P20585 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC23.82■■□□□ 1.4
MSH3P20585 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
MSH3P20585 DUSP8P4-201ENST00000399538 1761 ntBASIC23.81■■□□□ 1.4
MSH3P20585 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC23.81■■□□□ 1.4
MSH3P20585 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
MSH3P20585 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
MSH3P20585 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
MSH3P20585 AC129492.7-201ENST00000622992 756 ntBASIC23.81■■□□□ 1.4
MSH3P20585 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
MSH3P20585 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
MSH3P20585 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
MSH3P20585 AC018755.3-202ENST00000596210 929 ntBASIC23.8■■□□□ 1.4
MSH3P20585 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
MSH3P20585 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
MSH3P20585 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
MSH3P20585 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
MSH3P20585 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
MSH3P20585 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
MSH3P20585 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC23.78■■□□□ 1.4
MSH3P20585 AC010501.1-201ENST00000606270 1962 ntBASIC23.78■■□□□ 1.4
MSH3P20585 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
MSH3P20585 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
MSH3P20585 DUX4L9-201ENST00000449051 1259 ntBASIC23.78■■□□□ 1.4
MSH3P20585 SPCS2P3-201ENST00000500401 656 ntBASIC23.78■■□□□ 1.4
MSH3P20585 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
MSH3P20585 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
MSH3P20585 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
MSH3P20585 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
MSH3P20585 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
MSH3P20585 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC23.76■■□□□ 1.39
MSH3P20585 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
MSH3P20585 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
MSH3P20585 AC135731.1-201ENST00000569415 2548 ntBASIC23.76■■□□□ 1.39
MSH3P20585 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
MSH3P20585 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC23.76■■□□□ 1.39
MSH3P20585 AC012354.3-201ENST00000623734 483 ntBASIC23.76■■□□□ 1.39
MSH3P20585 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC23.76■■□□□ 1.39
MSH3P20585 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
MSH3P20585 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
MSH3P20585 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC23.75■■□□□ 1.39
MSH3P20585 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
MSH3P20585 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC23.75■■□□□ 1.39
MSH3P20585 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
MSH3P20585 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC23.75■■□□□ 1.39
MSH3P20585 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
MSH3P20585 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC23.75■■□□□ 1.39
MSH3P20585 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
MSH3P20585 MIR6765-201ENST00000614092 87 ntBASIC23.75■■□□□ 1.39
MSH3P20585 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
MSH3P20585 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC23.74■■□□□ 1.39
MSH3P20585 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
MSH3P20585 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC23.74■■□□□ 1.39
MSH3P20585 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
MSH3P20585 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
MSH3P20585 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC23.74■■□□□ 1.39
MSH3P20585 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
MSH3P20585 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms