Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SGCEO43556 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
SGCEO43556 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SGCEO43556 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
SGCEO43556 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SGCEO43556 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SGCEO43556 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC21.11■□□□□ 0.97
SGCEO43556 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SGCEO43556 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SGCEO43556 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SGCEO43556 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SGCEO43556 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SGCEO43556 RP9P-202ENST00000450133 1212 ntBASIC21.1■□□□□ 0.97
SGCEO43556 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC21.1■□□□□ 0.97
SGCEO43556 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC21.1■□□□□ 0.97
SGCEO43556 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SGCEO43556 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
SGCEO43556 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC21.09■□□□□ 0.97
SGCEO43556 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SGCEO43556 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC21.09■□□□□ 0.97
SGCEO43556 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
SGCEO43556 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
SGCEO43556 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC21.09■□□□□ 0.97
SGCEO43556 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC21.09■□□□□ 0.97
SGCEO43556 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC21.09■□□□□ 0.97
SGCEO43556 AC007029.1-201ENST00000604183 313 ntBASIC21.09■□□□□ 0.97
SGCEO43556 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SGCEO43556 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SGCEO43556 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SGCEO43556 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SGCEO43556 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC21.08■□□□□ 0.97
SGCEO43556 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC21.08■□□□□ 0.97
SGCEO43556 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SGCEO43556 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SGCEO43556 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SGCEO43556 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SGCEO43556 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SGCEO43556 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC21.07■□□□□ 0.96
SGCEO43556 AC093536.1-201ENST00000569153 554 ntBASIC21.07■□□□□ 0.96
SGCEO43556 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC21.06■□□□□ 0.96
SGCEO43556 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
SGCEO43556 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC21.06■□□□□ 0.96
SGCEO43556 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SGCEO43556 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SGCEO43556 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SGCEO43556 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SGCEO43556 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
SGCEO43556 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC21.06■□□□□ 0.96
SGCEO43556 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
SGCEO43556 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC21.05■□□□□ 0.96
SGCEO43556 RNF126P1-201ENST00000567452 1320 ntBASIC21.05■□□□□ 0.96
SGCEO43556 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SGCEO43556 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC21.05■□□□□ 0.96
SGCEO43556 AC096887.2-201ENST00000623443 1957 ntBASIC21.05■□□□□ 0.96
SGCEO43556 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC21.05■□□□□ 0.96
SGCEO43556 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SGCEO43556 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
SGCEO43556 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
SGCEO43556 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SGCEO43556 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SGCEO43556 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
SGCEO43556 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
SGCEO43556 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SGCEO43556 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
SGCEO43556 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
SGCEO43556 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SGCEO43556 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SGCEO43556 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SGCEO43556 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SGCEO43556 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SGCEO43556 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SGCEO43556 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SGCEO43556 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
SGCEO43556 GFER-205ENST00000569451 517 ntTSL 5 BASIC21.02■□□□□ 0.96
SGCEO43556 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SGCEO43556 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SGCEO43556 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SGCEO43556 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC21.01■□□□□ 0.95
SGCEO43556 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC21.01■□□□□ 0.95
SGCEO43556 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
SGCEO43556 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC21.01■□□□□ 0.95
SGCEO43556 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC21.01■□□□□ 0.95
SGCEO43556 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
SGCEO43556 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SGCEO43556 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC21■□□□□ 0.95
SGCEO43556 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC21■□□□□ 0.95
SGCEO43556 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SGCEO43556 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC21■□□□□ 0.95
SGCEO43556 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC21■□□□□ 0.95
SGCEO43556 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SGCEO43556 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC21■□□□□ 0.95
SGCEO43556 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
SGCEO43556 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC21■□□□□ 0.95
SGCEO43556 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC21■□□□□ 0.95
SGCEO43556 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC21■□□□□ 0.95
SGCEO43556 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC21■□□□□ 0.95
SGCEO43556 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC21■□□□□ 0.95
SGCEO43556 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC21■□□□□ 0.95
SGCEO43556 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SGCEO43556 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms