Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC30.41■■■□□ 2.46
NPHP1O15259 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC30.41■■■□□ 2.46
NPHP1O15259 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC30.41■■■□□ 2.46
NPHP1O15259 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC30.41■■■□□ 2.46
NPHP1O15259 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
NPHP1O15259 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
NPHP1O15259 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC30.4■■■□□ 2.46
NPHP1O15259 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
NPHP1O15259 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC30.4■■■□□ 2.46
NPHP1O15259 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC30.39■■■□□ 2.46
NPHP1O15259 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
NPHP1O15259 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
NPHP1O15259 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC30.39■■■□□ 2.46
NPHP1O15259 TSPY9P-201ENST00000440215 945 ntBASIC30.39■■■□□ 2.46
NPHP1O15259 TSPY11P-201ENST00000442607 1045 ntBASIC30.39■■■□□ 2.46
NPHP1O15259 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC30.39■■■□□ 2.46
NPHP1O15259 LSM7-203ENST00000585409 512 ntTSL 2 BASIC30.39■■■□□ 2.46
NPHP1O15259 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.45
NPHP1O15259 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
NPHP1O15259 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
NPHP1O15259 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC30.38■■■□□ 2.45
NPHP1O15259 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC30.38■■■□□ 2.45
NPHP1O15259 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
NPHP1O15259 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC30.38■■■□□ 2.45
NPHP1O15259 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
NPHP1O15259 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC30.37■■■□□ 2.45
NPHP1O15259 UNC93B8-201ENST00000511903 705 ntBASIC30.37■■■□□ 2.45
NPHP1O15259 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC30.37■■■□□ 2.45
NPHP1O15259 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC30.36■■■□□ 2.45
NPHP1O15259 MIR935-201ENST00000401179 91 ntBASIC30.36■■■□□ 2.45
NPHP1O15259 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC30.36■■■□□ 2.45
NPHP1O15259 PEMT-206ENST00000435340 960 ntTSL 5 BASIC30.36■■■□□ 2.45
NPHP1O15259 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC30.36■■■□□ 2.45
NPHP1O15259 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
NPHP1O15259 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC30.36■■■□□ 2.45
NPHP1O15259 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
NPHP1O15259 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC30.36■■■□□ 2.45
NPHP1O15259 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC30.35■■■□□ 2.45
NPHP1O15259 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC30.35■■■□□ 2.45
NPHP1O15259 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC30.35■■■□□ 2.45
NPHP1O15259 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
NPHP1O15259 KRT18P24-201ENST00000344739 1156 ntBASIC30.34■■■□□ 2.45
NPHP1O15259 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
NPHP1O15259 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
NPHP1O15259 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
NPHP1O15259 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC30.33■■■□□ 2.45
NPHP1O15259 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC30.33■■■□□ 2.45
NPHP1O15259 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
NPHP1O15259 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC30.32■■■□□ 2.44
NPHP1O15259 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
NPHP1O15259 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
NPHP1O15259 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
NPHP1O15259 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
NPHP1O15259 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
NPHP1O15259 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC30.3■■■□□ 2.44
NPHP1O15259 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
NPHP1O15259 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC30.3■■■□□ 2.44
NPHP1O15259 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC30.28■■■□□ 2.44
NPHP1O15259 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC30.28■■■□□ 2.44
NPHP1O15259 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC30.28■■■□□ 2.44
NPHP1O15259 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC30.28■■■□□ 2.44
NPHP1O15259 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC30.28■■■□□ 2.44
NPHP1O15259 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC30.27■■■□□ 2.44
NPHP1O15259 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC30.27■■■□□ 2.44
NPHP1O15259 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
NPHP1O15259 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC30.27■■■□□ 2.44
NPHP1O15259 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC30.27■■■□□ 2.44
NPHP1O15259 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC30.27■■■□□ 2.44
NPHP1O15259 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC30.27■■■□□ 2.44
NPHP1O15259 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
NPHP1O15259 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC30.26■■■□□ 2.44
NPHP1O15259 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC30.26■■■□□ 2.43
NPHP1O15259 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
NPHP1O15259 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC30.26■■■□□ 2.43
NPHP1O15259 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC30.26■■■□□ 2.43
NPHP1O15259 AC120024.1-201ENST00000562672 995 ntBASIC30.26■■■□□ 2.43
NPHP1O15259 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC30.26■■■□□ 2.43
NPHP1O15259 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC30.26■■■□□ 2.43
NPHP1O15259 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC30.26■■■□□ 2.43
NPHP1O15259 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
NPHP1O15259 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
NPHP1O15259 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
NPHP1O15259 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC30.25■■■□□ 2.43
NPHP1O15259 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC30.25■■■□□ 2.43
NPHP1O15259 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
NPHP1O15259 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
NPHP1O15259 DRD5P2-201ENST00000421395 2012 ntBASIC30.24■■■□□ 2.43
NPHP1O15259 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC30.24■■■□□ 2.43
NPHP1O15259 AC137630.3-201ENST00000607245 391 ntBASIC30.24■■■□□ 2.43
NPHP1O15259 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC30.24■■■□□ 2.43
NPHP1O15259 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
NPHP1O15259 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
NPHP1O15259 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC30.23■■■□□ 2.43
NPHP1O15259 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC30.23■■■□□ 2.43
NPHP1O15259 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC30.23■■■□□ 2.43
NPHP1O15259 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC30.23■■■□□ 2.43
NPHP1O15259 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
NPHP1O15259 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC30.22■■■□□ 2.43
NPHP1O15259 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC30.22■■■□□ 2.43
NPHP1O15259 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
Retrieved 100 of 98,524 protein–RNA pairs in 13.1 ms