Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC23.12■■□□□ 1.29
SLC28A1O00337 MED17-227ENST00000640521 2047 ntTSL 5 BASIC23.12■■□□□ 1.29
SLC28A1O00337 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
SLC28A1O00337 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
SLC28A1O00337 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
SLC28A1O00337 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
SLC28A1O00337 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC23.11■■□□□ 1.29
SLC28A1O00337 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
SLC28A1O00337 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
SLC28A1O00337 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
SLC28A1O00337 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC23.09■■□□□ 1.29
SLC28A1O00337 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
SLC28A1O00337 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
SLC28A1O00337 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
SLC28A1O00337 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC23.09■■□□□ 1.29
SLC28A1O00337 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC23.09■■□□□ 1.29
SLC28A1O00337 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC23.09■■□□□ 1.29
SLC28A1O00337 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
SLC28A1O00337 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC23.09■■□□□ 1.29
SLC28A1O00337 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
SLC28A1O00337 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC23.08■■□□□ 1.29
SLC28A1O00337 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
SLC28A1O00337 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
SLC28A1O00337 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC23.07■■□□□ 1.28
SLC28A1O00337 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
SLC28A1O00337 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
SLC28A1O00337 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
SLC28A1O00337 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
SLC28A1O00337 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
SLC28A1O00337 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
SLC28A1O00337 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC23.06■■□□□ 1.28
SLC28A1O00337 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC23.06■■□□□ 1.28
SLC28A1O00337 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
SLC28A1O00337 PFN2-211ENST00000489155 636 ntTSL 4 BASIC23.06■■□□□ 1.28
SLC28A1O00337 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SLC28A1O00337 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SLC28A1O00337 AC093323.1-202ENST00000635031 2045 ntBASIC23.06■■□□□ 1.28
SLC28A1O00337 AC138932.3-201ENST00000567634 1902 ntBASIC23.06■■□□□ 1.28
SLC28A1O00337 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
SLC28A1O00337 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
SLC28A1O00337 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC23.05■■□□□ 1.28
SLC28A1O00337 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SLC28A1O00337 AC097639.1-201ENST00000565519 1891 ntBASIC23.05■■□□□ 1.28
SLC28A1O00337 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
SLC28A1O00337 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
SLC28A1O00337 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
SLC28A1O00337 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
SLC28A1O00337 AL157400.5-201ENST00000507624 621 ntBASIC23.05■■□□□ 1.28
SLC28A1O00337 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
SLC28A1O00337 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
SLC28A1O00337 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
SLC28A1O00337 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
SLC28A1O00337 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
SLC28A1O00337 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
SLC28A1O00337 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
SLC28A1O00337 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SLC28A1O00337 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
SLC28A1O00337 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
SLC28A1O00337 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC23.05■■□□□ 1.28
SLC28A1O00337 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
SLC28A1O00337 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
SLC28A1O00337 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC23.04■■□□□ 1.28
SLC28A1O00337 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SLC28A1O00337 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC23.04■■□□□ 1.28
SLC28A1O00337 AC025884.2-201ENST00000553429 711 ntBASIC23.04■■□□□ 1.28
SLC28A1O00337 MIR7108-201ENST00000614319 87 ntBASIC23.04■■□□□ 1.28
SLC28A1O00337 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SLC28A1O00337 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC23.04■■□□□ 1.28
SLC28A1O00337 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC23.03■■□□□ 1.28
SLC28A1O00337 AC060814.1-201ENST00000554326 538 ntBASIC23.03■■□□□ 1.28
SLC28A1O00337 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SLC28A1O00337 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SLC28A1O00337 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SLC28A1O00337 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SLC28A1O00337 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
SLC28A1O00337 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
SLC28A1O00337 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC23.02■■□□□ 1.28
SLC28A1O00337 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC23.02■■□□□ 1.28
SLC28A1O00337 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
SLC28A1O00337 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SLC28A1O00337 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SLC28A1O00337 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
SLC28A1O00337 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SLC28A1O00337 MIR3960-201ENST00000583311 91 ntBASIC23.01■■□□□ 1.27
SLC28A1O00337 MOB2-207ENST00000614710 705 ntTSL 5 BASIC23.01■■□□□ 1.27
SLC28A1O00337 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC23.01■■□□□ 1.27
SLC28A1O00337 PKM-204ENST00000449901 2526 ntTSL 2 BASIC23.01■■□□□ 1.27
SLC28A1O00337 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SLC28A1O00337 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC23■■□□□ 1.27
SLC28A1O00337 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC23■■□□□ 1.27
SLC28A1O00337 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.27
SLC28A1O00337 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
SLC28A1O00337 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC23■■□□□ 1.27
SLC28A1O00337 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC22.99■■□□□ 1.27
SLC28A1O00337 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC22.99■■□□□ 1.27
SLC28A1O00337 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
SLC28A1O00337 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
SLC28A1O00337 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
SLC28A1O00337 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
SLC28A1O00337 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC22.98■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms