Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC22.1■■□□□ 1.13
COL6A6A6NMZ7 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC22.1■■□□□ 1.13
COL6A6A6NMZ7 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
COL6A6A6NMZ7 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC22.1■■□□□ 1.13
COL6A6A6NMZ7 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC22.1■■□□□ 1.13
COL6A6A6NMZ7 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC22.1■■□□□ 1.13
COL6A6A6NMZ7 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC22.09■■□□□ 1.13
COL6A6A6NMZ7 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC22.09■■□□□ 1.13
COL6A6A6NMZ7 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
COL6A6A6NMZ7 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
COL6A6A6NMZ7 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
COL6A6A6NMZ7 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC22.09■■□□□ 1.13
COL6A6A6NMZ7 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
COL6A6A6NMZ7 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
COL6A6A6NMZ7 MIR4281-201ENST00000580852 62 ntBASIC22.08■■□□□ 1.13
COL6A6A6NMZ7 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
COL6A6A6NMZ7 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
COL6A6A6NMZ7 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC22.08■■□□□ 1.12
COL6A6A6NMZ7 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC22.07■■□□□ 1.12
COL6A6A6NMZ7 LSM4-201ENST00000252816 986 ntTSL 2 BASIC22.07■■□□□ 1.12
COL6A6A6NMZ7 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
COL6A6A6NMZ7 AC010997.5-201ENST00000609182 354 ntBASIC22.07■■□□□ 1.12
COL6A6A6NMZ7 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
COL6A6A6NMZ7 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
COL6A6A6NMZ7 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC22.06■■□□□ 1.12
COL6A6A6NMZ7 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
COL6A6A6NMZ7 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC22.06■■□□□ 1.12
COL6A6A6NMZ7 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC22.06■■□□□ 1.12
COL6A6A6NMZ7 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC22.05■■□□□ 1.12
COL6A6A6NMZ7 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
COL6A6A6NMZ7 ABCB10P3-201ENST00000561950 2166 ntBASIC22.05■■□□□ 1.12
COL6A6A6NMZ7 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
COL6A6A6NMZ7 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC22.05■■□□□ 1.12
COL6A6A6NMZ7 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
COL6A6A6NMZ7 AC120024.1-201ENST00000562672 995 ntBASIC22.04■■□□□ 1.12
COL6A6A6NMZ7 KRT18P10-201ENST00000388836 1287 ntBASIC22.03■■□□□ 1.12
COL6A6A6NMZ7 AC087623.3-201ENST00000607047 1098 ntBASIC22.03■■□□□ 1.12
COL6A6A6NMZ7 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC22.03■■□□□ 1.12
COL6A6A6NMZ7 AL162430.1-201ENST00000480705 870 ntBASIC22.03■■□□□ 1.12
COL6A6A6NMZ7 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC22.02■■□□□ 1.12
COL6A6A6NMZ7 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC22.02■■□□□ 1.12
COL6A6A6NMZ7 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC22.02■■□□□ 1.12
COL6A6A6NMZ7 MTDHP2-201ENST00000601468 714 ntBASIC22.02■■□□□ 1.12
COL6A6A6NMZ7 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
COL6A6A6NMZ7 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC22.01■■□□□ 1.11
COL6A6A6NMZ7 WHAMMP3-201ENST00000611636 1609 ntBASIC22■■□□□ 1.11
COL6A6A6NMZ7 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC22■■□□□ 1.11
COL6A6A6NMZ7 SENP5-202ENST00000419026 973 ntTSL 3 BASIC22■■□□□ 1.11
COL6A6A6NMZ7 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC22■■□□□ 1.11
COL6A6A6NMZ7 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
COL6A6A6NMZ7 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC22■■□□□ 1.11
COL6A6A6NMZ7 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC22■■□□□ 1.11
COL6A6A6NMZ7 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC22■■□□□ 1.11
COL6A6A6NMZ7 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC21.99■■□□□ 1.11
COL6A6A6NMZ7 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC21.99■■□□□ 1.11
COL6A6A6NMZ7 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC21.99■■□□□ 1.11
COL6A6A6NMZ7 ANKRD20A6P-201ENST00000618763 204 ntBASIC21.99■■□□□ 1.11
COL6A6A6NMZ7 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC21.99■■□□□ 1.11
COL6A6A6NMZ7 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC21.99■■□□□ 1.11
COL6A6A6NMZ7 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC21.99■■□□□ 1.11
COL6A6A6NMZ7 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
COL6A6A6NMZ7 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
COL6A6A6NMZ7 MIR6821-201ENST00000617625 74 ntBASIC21.99■■□□□ 1.11
COL6A6A6NMZ7 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC21.99■■□□□ 1.11
COL6A6A6NMZ7 ST7-AS1-201ENST00000456775 1889 ntBASIC21.99■■□□□ 1.11
COL6A6A6NMZ7 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
COL6A6A6NMZ7 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
COL6A6A6NMZ7 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC21.98■■□□□ 1.11
COL6A6A6NMZ7 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
COL6A6A6NMZ7 AC097381.1-201ENST00000429019 1296 ntBASIC21.98■■□□□ 1.11
COL6A6A6NMZ7 EXOG-217ENST00000630638 197 ntTSL 5 BASIC21.98■■□□□ 1.11
COL6A6A6NMZ7 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC21.98■■□□□ 1.11
COL6A6A6NMZ7 PBX2P1-201ENST00000493219 1291 ntBASIC21.97■■□□□ 1.11
COL6A6A6NMZ7 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
COL6A6A6NMZ7 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
COL6A6A6NMZ7 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
COL6A6A6NMZ7 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
COL6A6A6NMZ7 PARL-206ENST00000435888 1098 ntTSL 5 BASIC21.97■■□□□ 1.11
COL6A6A6NMZ7 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC21.97■■□□□ 1.11
COL6A6A6NMZ7 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
COL6A6A6NMZ7 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
COL6A6A6NMZ7 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
COL6A6A6NMZ7 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
COL6A6A6NMZ7 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC21.96■■□□□ 1.11
COL6A6A6NMZ7 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC21.96■■□□□ 1.11
COL6A6A6NMZ7 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC21.96■■□□□ 1.11
COL6A6A6NMZ7 EDA-201ENST00000338901 1233 ntBASIC21.96■■□□□ 1.11
COL6A6A6NMZ7 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
COL6A6A6NMZ7 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
COL6A6A6NMZ7 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
COL6A6A6NMZ7 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
COL6A6A6NMZ7 AC090192.1-201ENST00000517740 490 ntBASIC21.95■■□□□ 1.1
COL6A6A6NMZ7 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
COL6A6A6NMZ7 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
COL6A6A6NMZ7 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
COL6A6A6NMZ7 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC21.94■■□□□ 1.1
COL6A6A6NMZ7 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
COL6A6A6NMZ7 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
COL6A6A6NMZ7 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
COL6A6A6NMZ7 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC21.94■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms