Protein–RNA interactions for Protein: A0A0D9SF12

CCDC163, Coiled-coil domain-containing 163, humanhuman

Predictions only

Length 145 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC163A0A0D9SF12 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
CCDC163A0A0D9SF12 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
CCDC163A0A0D9SF12 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
CCDC163A0A0D9SF12 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
CCDC163A0A0D9SF12 NALT1-201ENST00000429224 738 ntTSL 5 BASIC24.15■■□□□ 1.46
CCDC163A0A0D9SF12 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC24.15■■□□□ 1.46
CCDC163A0A0D9SF12 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
CCDC163A0A0D9SF12 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC24.15■■□□□ 1.46
CCDC163A0A0D9SF12 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC24.14■■□□□ 1.46
CCDC163A0A0D9SF12 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC24.14■■□□□ 1.45
CCDC163A0A0D9SF12 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
CCDC163A0A0D9SF12 AC131281.2-201ENST00000520478 145 ntBASIC24.14■■□□□ 1.45
CCDC163A0A0D9SF12 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC24.13■■□□□ 1.45
CCDC163A0A0D9SF12 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC24.13■■□□□ 1.45
CCDC163A0A0D9SF12 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
CCDC163A0A0D9SF12 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC24.13■■□□□ 1.45
CCDC163A0A0D9SF12 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC24.12■■□□□ 1.45
CCDC163A0A0D9SF12 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
CCDC163A0A0D9SF12 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC24.12■■□□□ 1.45
CCDC163A0A0D9SF12 SRR-208ENST00000576848 588 ntTSL 4 BASIC24.12■■□□□ 1.45
CCDC163A0A0D9SF12 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
CCDC163A0A0D9SF12 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
CCDC163A0A0D9SF12 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC24.11■■□□□ 1.45
CCDC163A0A0D9SF12 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC24.11■■□□□ 1.45
CCDC163A0A0D9SF12 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC24.11■■□□□ 1.45
CCDC163A0A0D9SF12 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
CCDC163A0A0D9SF12 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
CCDC163A0A0D9SF12 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC24.1■■□□□ 1.45
CCDC163A0A0D9SF12 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC24.1■■□□□ 1.45
CCDC163A0A0D9SF12 TRIR-202ENST00000588213 841 ntTSL 3 BASIC24.1■■□□□ 1.45
CCDC163A0A0D9SF12 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC24.1■■□□□ 1.45
CCDC163A0A0D9SF12 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
CCDC163A0A0D9SF12 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC24.1■■□□□ 1.45
CCDC163A0A0D9SF12 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC24.09■■□□□ 1.45
CCDC163A0A0D9SF12 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC24.09■■□□□ 1.45
CCDC163A0A0D9SF12 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
CCDC163A0A0D9SF12 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC24.09■■□□□ 1.45
CCDC163A0A0D9SF12 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC24.08■■□□□ 1.45
CCDC163A0A0D9SF12 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
CCDC163A0A0D9SF12 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC24.08■■□□□ 1.45
CCDC163A0A0D9SF12 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC24.08■■□□□ 1.45
CCDC163A0A0D9SF12 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC24.08■■□□□ 1.45
CCDC163A0A0D9SF12 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC24.08■■□□□ 1.45
CCDC163A0A0D9SF12 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
CCDC163A0A0D9SF12 MIR3621-201ENST00000580529 85 ntBASIC24.08■■□□□ 1.45
CCDC163A0A0D9SF12 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC24.08■■□□□ 1.45
CCDC163A0A0D9SF12 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC24.08■■□□□ 1.44
CCDC163A0A0D9SF12 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
CCDC163A0A0D9SF12 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC24.07■■□□□ 1.44
CCDC163A0A0D9SF12 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC24.07■■□□□ 1.44
CCDC163A0A0D9SF12 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC24.07■■□□□ 1.44
CCDC163A0A0D9SF12 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC24.07■■□□□ 1.44
CCDC163A0A0D9SF12 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC24.07■■□□□ 1.44
CCDC163A0A0D9SF12 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC24.07■■□□□ 1.44
CCDC163A0A0D9SF12 AL136116.3-201ENST00000402907 1138 ntBASIC24.07■■□□□ 1.44
CCDC163A0A0D9SF12 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC24.07■■□□□ 1.44
CCDC163A0A0D9SF12 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
CCDC163A0A0D9SF12 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC24.06■■□□□ 1.44
CCDC163A0A0D9SF12 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC24.06■■□□□ 1.44
CCDC163A0A0D9SF12 MIR4281-201ENST00000580852 62 ntBASIC24.06■■□□□ 1.44
CCDC163A0A0D9SF12 AL117332.1-201ENST00000622628 974 ntBASIC24.06■■□□□ 1.44
CCDC163A0A0D9SF12 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC24.06■■□□□ 1.44
CCDC163A0A0D9SF12 AL449106.1-201ENST00000608517 1980 ntBASIC24.05■■□□□ 1.44
CCDC163A0A0D9SF12 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC24.05■■□□□ 1.44
CCDC163A0A0D9SF12 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC24.05■■□□□ 1.44
CCDC163A0A0D9SF12 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC24.05■■□□□ 1.44
CCDC163A0A0D9SF12 MIR6724-1-201ENST00000616420 92 ntBASIC24.05■■□□□ 1.44
CCDC163A0A0D9SF12 MIR6724-2-201ENST00000616483 92 ntBASIC24.05■■□□□ 1.44
CCDC163A0A0D9SF12 MIR6724-4-201ENST00000617390 92 ntBASIC24.05■■□□□ 1.44
CCDC163A0A0D9SF12 MIR6724-3-201ENST00000622482 92 ntBASIC24.05■■□□□ 1.44
CCDC163A0A0D9SF12 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC24.05■■□□□ 1.44
CCDC163A0A0D9SF12 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
CCDC163A0A0D9SF12 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC24.04■■□□□ 1.44
CCDC163A0A0D9SF12 AC010997.5-201ENST00000609182 354 ntBASIC24.04■■□□□ 1.44
CCDC163A0A0D9SF12 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC24.04■■□□□ 1.44
CCDC163A0A0D9SF12 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
CCDC163A0A0D9SF12 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC24.03■■□□□ 1.44
CCDC163A0A0D9SF12 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
CCDC163A0A0D9SF12 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC24.03■■□□□ 1.44
CCDC163A0A0D9SF12 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC24.03■■□□□ 1.44
CCDC163A0A0D9SF12 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
CCDC163A0A0D9SF12 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
CCDC163A0A0D9SF12 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC24.02■■□□□ 1.44
CCDC163A0A0D9SF12 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC24.02■■□□□ 1.44
CCDC163A0A0D9SF12 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC24.02■■□□□ 1.44
CCDC163A0A0D9SF12 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
CCDC163A0A0D9SF12 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC24.02■■□□□ 1.44
CCDC163A0A0D9SF12 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC24.01■■□□□ 1.43
CCDC163A0A0D9SF12 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC24.01■■□□□ 1.43
CCDC163A0A0D9SF12 AC133561.4-201ENST00000566112 224 ntBASIC24.01■■□□□ 1.43
CCDC163A0A0D9SF12 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
CCDC163A0A0D9SF12 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
CCDC163A0A0D9SF12 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC24■■□□□ 1.43
CCDC163A0A0D9SF12 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC24■■□□□ 1.43
CCDC163A0A0D9SF12 AL356740.2-201ENST00000601559 647 ntBASIC24■■□□□ 1.43
CCDC163A0A0D9SF12 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC24■■□□□ 1.43
CCDC163A0A0D9SF12 AC110285.6-201ENST00000617652 491 ntBASIC24■■□□□ 1.43
CCDC163A0A0D9SF12 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC24■■□□□ 1.43
CCDC163A0A0D9SF12 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC24■■□□□ 1.43
CCDC163A0A0D9SF12 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 11.9 ms