Protein–RNA interactions for Protein: A0A0B4J268

TRAV4, T-cell receptor alpha variable 4 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV4A0A0B4J268 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRAV4A0A0B4J268 AL157400.5-201ENST00000507624 621 ntBASIC17.23■□□□□ 0.35
TRAV4A0A0B4J268 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC17.23■□□□□ 0.35
TRAV4A0A0B4J268 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRAV4A0A0B4J268 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC17.22■□□□□ 0.35
TRAV4A0A0B4J268 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV4A0A0B4J268 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV4A0A0B4J268 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV4A0A0B4J268 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV4A0A0B4J268 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
TRAV4A0A0B4J268 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.35
TRAV4A0A0B4J268 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV4A0A0B4J268 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC17.21■□□□□ 0.35
TRAV4A0A0B4J268 PFN2-211ENST00000489155 636 ntTSL 4 BASIC17.21■□□□□ 0.35
TRAV4A0A0B4J268 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC17.21■□□□□ 0.35
TRAV4A0A0B4J268 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC17.21■□□□□ 0.35
TRAV4A0A0B4J268 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV4A0A0B4J268 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
TRAV4A0A0B4J268 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC17.21■□□□□ 0.35
TRAV4A0A0B4J268 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV4A0A0B4J268 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
TRAV4A0A0B4J268 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TRAV4A0A0B4J268 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC17.2■□□□□ 0.34
TRAV4A0A0B4J268 AC025884.2-201ENST00000553429 711 ntBASIC17.2■□□□□ 0.34
TRAV4A0A0B4J268 MIR3960-201ENST00000583311 91 ntBASIC17.2■□□□□ 0.34
TRAV4A0A0B4J268 MOB2-207ENST00000614710 705 ntTSL 5 BASIC17.2■□□□□ 0.34
TRAV4A0A0B4J268 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRAV4A0A0B4J268 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC17.2■□□□□ 0.34
TRAV4A0A0B4J268 REST-210ENST00000638187 1334 ntTSL 5 BASIC17.2■□□□□ 0.34
TRAV4A0A0B4J268 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRAV4A0A0B4J268 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV4A0A0B4J268 AC020928.2-201ENST00000588717 2197 ntBASIC17.19■□□□□ 0.34
TRAV4A0A0B4J268 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
TRAV4A0A0B4J268 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC17.19■□□□□ 0.34
TRAV4A0A0B4J268 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV4A0A0B4J268 SRP68-213ENST00000629930 165 ntTSL 5 BASIC17.19■□□□□ 0.34
TRAV4A0A0B4J268 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV4A0A0B4J268 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV4A0A0B4J268 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV4A0A0B4J268 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV4A0A0B4J268 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV4A0A0B4J268 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV4A0A0B4J268 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC17.18■□□□□ 0.34
TRAV4A0A0B4J268 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV4A0A0B4J268 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC17.18■□□□□ 0.34
TRAV4A0A0B4J268 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC17.18■□□□□ 0.34
TRAV4A0A0B4J268 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV4A0A0B4J268 AC092296.2-201ENST00000589470 999 ntBASIC17.18■□□□□ 0.34
TRAV4A0A0B4J268 AC022413.1-201ENST00000624602 984 ntBASIC17.18■□□□□ 0.34
TRAV4A0A0B4J268 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV4A0A0B4J268 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV4A0A0B4J268 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC17.18■□□□□ 0.34
TRAV4A0A0B4J268 SMPD5-203ENST00000639008 1464 ntBASIC17.18■□□□□ 0.34
TRAV4A0A0B4J268 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV4A0A0B4J268 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC17.17■□□□□ 0.34
TRAV4A0A0B4J268 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV4A0A0B4J268 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV4A0A0B4J268 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV4A0A0B4J268 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV4A0A0B4J268 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV4A0A0B4J268 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
TRAV4A0A0B4J268 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC17.17■□□□□ 0.34
TRAV4A0A0B4J268 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC17.17■□□□□ 0.34
TRAV4A0A0B4J268 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
TRAV4A0A0B4J268 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV4A0A0B4J268 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV4A0A0B4J268 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC17.16■□□□□ 0.34
TRAV4A0A0B4J268 ECEL1P2-201ENST00000461596 1295 ntBASIC17.16■□□□□ 0.34
TRAV4A0A0B4J268 CEP120-209ENST00000515110 606 ntTSL 3 BASIC17.16■□□□□ 0.34
TRAV4A0A0B4J268 AC096887.2-201ENST00000623443 1957 ntBASIC17.16■□□□□ 0.34
TRAV4A0A0B4J268 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC17.16■□□□□ 0.34
TRAV4A0A0B4J268 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV4A0A0B4J268 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV4A0A0B4J268 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV4A0A0B4J268 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV4A0A0B4J268 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV4A0A0B4J268 MIR4449-201ENST00000578365 66 ntBASIC17.15■□□□□ 0.34
TRAV4A0A0B4J268 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV4A0A0B4J268 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV4A0A0B4J268 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV4A0A0B4J268 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV4A0A0B4J268 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV4A0A0B4J268 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV4A0A0B4J268 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRAV4A0A0B4J268 MBP-237ENST00000579129 1052 ntTSL 5 BASIC17.14■□□□□ 0.33
TRAV4A0A0B4J268 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC17.14■□□□□ 0.33
TRAV4A0A0B4J268 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
TRAV4A0A0B4J268 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV4A0A0B4J268 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV4A0A0B4J268 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV4A0A0B4J268 HES4-202ENST00000428771 1040 ntTSL 2 BASIC17.13■□□□□ 0.33
TRAV4A0A0B4J268 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
TRAV4A0A0B4J268 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC17.13■□□□□ 0.33
TRAV4A0A0B4J268 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV4A0A0B4J268 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
TRAV4A0A0B4J268 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
TRAV4A0A0B4J268 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV4A0A0B4J268 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV4A0A0B4J268 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
TRAV4A0A0B4J268 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 68.2 ms