Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA2Q9Y261 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
FOXA2Q9Y261 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA2Q9Y261 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC13.75□□□□□ -0.21
FOXA2Q9Y261 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA2Q9Y261 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA2Q9Y261 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC13.75□□□□□ -0.21
FOXA2Q9Y261 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA2Q9Y261 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC13.75□□□□□ -0.21
FOXA2Q9Y261 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA2Q9Y261 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA2Q9Y261 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA2Q9Y261 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC13.75□□□□□ -0.21
FOXA2Q9Y261 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA2Q9Y261 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA2Q9Y261 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC13.75□□□□□ -0.21
FOXA2Q9Y261 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA2Q9Y261 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
FOXA2Q9Y261 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
FOXA2Q9Y261 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA2Q9Y261 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC13.75□□□□□ -0.21
FOXA2Q9Y261 LSM5-204ENST00000409909 740 ntTSL 2 BASIC13.75□□□□□ -0.21
FOXA2Q9Y261 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC13.75□□□□□ -0.21
FOXA2Q9Y261 SAPCD2P3-201ENST00000455031 850 ntBASIC13.75□□□□□ -0.21
FOXA2Q9Y261 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC13.75□□□□□ -0.21
FOXA2Q9Y261 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC13.75□□□□□ -0.21
FOXA2Q9Y261 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC13.75□□□□□ -0.21
FOXA2Q9Y261 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC13.75□□□□□ -0.21
FOXA2Q9Y261 KRT126P-201ENST00000549467 1181 ntBASIC13.75□□□□□ -0.21
FOXA2Q9Y261 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA2Q9Y261 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA2Q9Y261 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA2Q9Y261 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
FOXA2Q9Y261 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA2Q9Y261 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA2Q9Y261 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC13.75□□□□□ -0.21
FOXA2Q9Y261 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC13.75□□□□□ -0.21
FOXA2Q9Y261 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
FOXA2Q9Y261 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC13.75□□□□□ -0.21
FOXA2Q9Y261 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA2Q9Y261 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA2Q9Y261 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA2Q9Y261 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC13.75□□□□□ -0.21
FOXA2Q9Y261 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC13.75□□□□□ -0.21
FOXA2Q9Y261 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC13.75□□□□□ -0.21
FOXA2Q9Y261 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA2Q9Y261 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA2Q9Y261 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA2Q9Y261 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC13.74□□□□□ -0.21
FOXA2Q9Y261 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC13.74□□□□□ -0.21
FOXA2Q9Y261 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA2Q9Y261 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA2Q9Y261 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA2Q9Y261 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA2Q9Y261 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA2Q9Y261 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC13.74□□□□□ -0.21
FOXA2Q9Y261 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC13.74□□□□□ -0.21
FOXA2Q9Y261 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA2Q9Y261 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA2Q9Y261 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC13.74□□□□□ -0.21
FOXA2Q9Y261 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
FOXA2Q9Y261 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA2Q9Y261 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA2Q9Y261 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA2Q9Y261 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC13.74□□□□□ -0.21
FOXA2Q9Y261 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA2Q9Y261 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA2Q9Y261 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC13.74□□□□□ -0.21
FOXA2Q9Y261 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC13.74□□□□□ -0.21
FOXA2Q9Y261 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC13.74□□□□□ -0.21
FOXA2Q9Y261 PP7080-204ENST00000510714 601 ntTSL 3 BASIC13.74□□□□□ -0.21
FOXA2Q9Y261 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA2Q9Y261 IRF8-202ENST00000562492 946 ntTSL 3 BASIC13.74□□□□□ -0.21
FOXA2Q9Y261 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
FOXA2Q9Y261 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA2Q9Y261 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC13.74□□□□□ -0.21
FOXA2Q9Y261 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC13.74□□□□□ -0.21
FOXA2Q9Y261 REXO1L6P-202ENST00000619970 1078 ntBASIC13.74□□□□□ -0.21
FOXA2Q9Y261 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC13.74□□□□□ -0.21
FOXA2Q9Y261 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA2Q9Y261 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA2Q9Y261 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA2Q9Y261 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
FOXA2Q9Y261 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA2Q9Y261 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC13.74□□□□□ -0.21
FOXA2Q9Y261 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA2Q9Y261 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC13.74□□□□□ -0.21
FOXA2Q9Y261 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA2Q9Y261 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
FOXA2Q9Y261 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC13.74□□□□□ -0.21
FOXA2Q9Y261 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA2Q9Y261 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA2Q9Y261 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA2Q9Y261 AP005117.1-201ENST00000584346 1413 ntBASIC13.73□□□□□ -0.21
FOXA2Q9Y261 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC13.73□□□□□ -0.21
FOXA2Q9Y261 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA2Q9Y261 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA2Q9Y261 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC13.73□□□□□ -0.21
FOXA2Q9Y261 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA2Q9Y261 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms