Protein–RNA interactions for Protein: Q9NQG7

HPS4, Hermansky-Pudlak syndrome 4 protein, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4Q9NQG7 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HPS4Q9NQG7 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
HPS4Q9NQG7 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HPS4Q9NQG7 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HPS4Q9NQG7 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
HPS4Q9NQG7 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
HPS4Q9NQG7 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
HPS4Q9NQG7 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HPS4Q9NQG7 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
HPS4Q9NQG7 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
HPS4Q9NQG7 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HPS4Q9NQG7 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HPS4Q9NQG7 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HPS4Q9NQG7 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HPS4Q9NQG7 FAM8A3P-201ENST00000427218 844 ntBASIC17.55■□□□□ 0.4
HPS4Q9NQG7 AC140658.5-201ENST00000438532 169 ntBASIC17.55■□□□□ 0.4
HPS4Q9NQG7 TIMM8BP1-201ENST00000452384 211 ntBASIC17.55■□□□□ 0.4
HPS4Q9NQG7 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC17.55■□□□□ 0.4
HPS4Q9NQG7 AC093512.1-201ENST00000617969 520 ntBASIC17.55■□□□□ 0.4
HPS4Q9NQG7 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
HPS4Q9NQG7 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC17.55■□□□□ 0.4
HPS4Q9NQG7 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HPS4Q9NQG7 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HPS4Q9NQG7 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HPS4Q9NQG7 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC17.55■□□□□ 0.4
HPS4Q9NQG7 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
HPS4Q9NQG7 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HPS4Q9NQG7 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HPS4Q9NQG7 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC17.54■□□□□ 0.4
HPS4Q9NQG7 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HPS4Q9NQG7 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
HPS4Q9NQG7 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HPS4Q9NQG7 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HPS4Q9NQG7 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HPS4Q9NQG7 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HPS4Q9NQG7 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC17.54■□□□□ 0.4
HPS4Q9NQG7 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HPS4Q9NQG7 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HPS4Q9NQG7 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HPS4Q9NQG7 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HPS4Q9NQG7 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC17.54■□□□□ 0.4
HPS4Q9NQG7 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
HPS4Q9NQG7 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HPS4Q9NQG7 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HPS4Q9NQG7 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
HPS4Q9NQG7 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HPS4Q9NQG7 KRT8P48-201ENST00000515599 1220 ntBASIC17.54■□□□□ 0.4
HPS4Q9NQG7 MMP17-203ENST00000535004 719 ntTSL 3 BASIC17.54■□□□□ 0.4
HPS4Q9NQG7 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC17.54■□□□□ 0.4
HPS4Q9NQG7 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC17.54■□□□□ 0.4
HPS4Q9NQG7 AC026120.1-201ENST00000611536 926 ntBASIC17.54■□□□□ 0.4
HPS4Q9NQG7 LINC00628-201ENST00000628516 1289 ntBASIC17.54■□□□□ 0.4
HPS4Q9NQG7 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC17.54■□□□□ 0.4
HPS4Q9NQG7 AL645728.2-201ENST00000641974 660 ntBASIC17.54■□□□□ 0.4
HPS4Q9NQG7 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC17.54■□□□□ 0.4
HPS4Q9NQG7 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC17.54■□□□□ 0.4
HPS4Q9NQG7 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC17.54■□□□□ 0.4
HPS4Q9NQG7 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
HPS4Q9NQG7 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.54■□□□□ 0.4
HPS4Q9NQG7 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
HPS4Q9NQG7 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC17.54■□□□□ 0.4
HPS4Q9NQG7 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HPS4Q9NQG7 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
HPS4Q9NQG7 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
HPS4Q9NQG7 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC17.54■□□□□ 0.4
HPS4Q9NQG7 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
HPS4Q9NQG7 AC012313.1-201ENST00000593393 3059 ntBASIC17.53■□□□□ 0.4
HPS4Q9NQG7 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HPS4Q9NQG7 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.53■□□□□ 0.4
HPS4Q9NQG7 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HPS4Q9NQG7 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC17.53■□□□□ 0.4
HPS4Q9NQG7 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
HPS4Q9NQG7 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
HPS4Q9NQG7 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HPS4Q9NQG7 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
HPS4Q9NQG7 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HPS4Q9NQG7 AC012317.2-201ENST00000623305 2251 ntBASIC17.53■□□□□ 0.4
HPS4Q9NQG7 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HPS4Q9NQG7 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HPS4Q9NQG7 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HPS4Q9NQG7 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
HPS4Q9NQG7 AL627223.1-201ENST00000416693 442 ntBASIC17.53■□□□□ 0.4
HPS4Q9NQG7 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC17.53■□□□□ 0.4
HPS4Q9NQG7 WDR53-203ENST00000429115 683 ntTSL 2 BASIC17.53■□□□□ 0.4
HPS4Q9NQG7 AL671277.1-201ENST00000429656 993 ntBASIC17.53■□□□□ 0.4
HPS4Q9NQG7 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC17.53■□□□□ 0.4
HPS4Q9NQG7 GATB-205ENST00000508611 605 ntTSL 2 BASIC17.53■□□□□ 0.4
HPS4Q9NQG7 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC17.53■□□□□ 0.4
HPS4Q9NQG7 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC17.53■□□□□ 0.4
HPS4Q9NQG7 SPCS2P1-201ENST00000561636 679 ntBASIC17.53■□□□□ 0.4
HPS4Q9NQG7 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HPS4Q9NQG7 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.53■□□□□ 0.4
HPS4Q9NQG7 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HPS4Q9NQG7 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HPS4Q9NQG7 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
HPS4Q9NQG7 FST-202ENST00000396947 2538 ntTSL 5 BASIC17.53■□□□□ 0.4
HPS4Q9NQG7 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HPS4Q9NQG7 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HPS4Q9NQG7 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HPS4Q9NQG7 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms