Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 NAA38-203ENST00000575071 553 ntTSL 2 BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 TK1-204ENST00000590430 683 ntTSL 3 BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC14.69□□□□□ -0.06
CHMP1AQ9HD42 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 TERF1P1-201ENST00000311003 1181 ntBASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 AC096633.1-201ENST00000422446 749 ntBASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 GXYLT1P3-201ENST00000453058 1193 ntBASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 BANP-204ENST00000393208 2283 ntTSL 2 BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 RHBDF1P1-201ENST00000427504 1941 ntBASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 LINC00554-201ENST00000564841 3011 ntBASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CHMP1AQ9HD42 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CHMP1AQ9HD42 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CHMP1AQ9HD42 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CHMP1AQ9HD42 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
CHMP1AQ9HD42 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CHMP1AQ9HD42 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CHMP1AQ9HD42 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC14.67□□□□□ -0.06
CHMP1AQ9HD42 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CHMP1AQ9HD42 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CHMP1AQ9HD42 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CHMP1AQ9HD42 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CHMP1AQ9HD42 AC093525.9-201ENST00000624961 1746 ntBASIC14.67□□□□□ -0.06
CHMP1AQ9HD42 AC046185.3-201ENST00000623228 1824 ntBASIC14.67□□□□□ -0.06
CHMP1AQ9HD42 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC14.67□□□□□ -0.06
CHMP1AQ9HD42 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CHMP1AQ9HD42 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms