Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC16.55■□□□□ 0.24
VPS13AQ96RL7 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
VPS13AQ96RL7 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
VPS13AQ96RL7 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
VPS13AQ96RL7 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS13AQ96RL7 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS13AQ96RL7 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
VPS13AQ96RL7 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS13AQ96RL7 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS13AQ96RL7 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC16.54■□□□□ 0.24
VPS13AQ96RL7 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC16.54■□□□□ 0.24
VPS13AQ96RL7 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC16.54■□□□□ 0.24
VPS13AQ96RL7 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VPS13AQ96RL7 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS13AQ96RL7 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS13AQ96RL7 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS13AQ96RL7 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC16.54■□□□□ 0.24
VPS13AQ96RL7 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC16.54■□□□□ 0.24
VPS13AQ96RL7 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC16.54■□□□□ 0.24
VPS13AQ96RL7 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VPS13AQ96RL7 AP000974.1-201ENST00000623909 2387 ntBASIC16.54■□□□□ 0.24
VPS13AQ96RL7 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC16.54■□□□□ 0.24
VPS13AQ96RL7 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC16.54■□□□□ 0.24
VPS13AQ96RL7 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
VPS13AQ96RL7 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS13AQ96RL7 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS13AQ96RL7 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC16.54■□□□□ 0.24
VPS13AQ96RL7 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC16.54■□□□□ 0.24
VPS13AQ96RL7 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC16.54■□□□□ 0.24
VPS13AQ96RL7 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC16.54■□□□□ 0.24
VPS13AQ96RL7 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC16.54■□□□□ 0.24
VPS13AQ96RL7 AC007431.3-201ENST00000623221 587 ntBASIC16.54■□□□□ 0.24
VPS13AQ96RL7 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.54■□□□□ 0.24
VPS13AQ96RL7 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS13AQ96RL7 AC093525.8-201ENST00000624099 1342 ntBASIC16.54■□□□□ 0.24
VPS13AQ96RL7 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS13AQ96RL7 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS13AQ96RL7 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VPS13AQ96RL7 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC16.53■□□□□ 0.24
VPS13AQ96RL7 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC16.53■□□□□ 0.24
VPS13AQ96RL7 AC010319.3-201ENST00000597028 470 ntBASIC16.53■□□□□ 0.24
VPS13AQ96RL7 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS13AQ96RL7 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS13AQ96RL7 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC16.53■□□□□ 0.24
VPS13AQ96RL7 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS13AQ96RL7 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS13AQ96RL7 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS13AQ96RL7 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS13AQ96RL7 AL353732.1-201ENST00000569618 1459 ntBASIC16.53■□□□□ 0.24
VPS13AQ96RL7 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS13AQ96RL7 POR-209ENST00000439269 1858 ntTSL 2 BASIC16.53■□□□□ 0.24
VPS13AQ96RL7 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VPS13AQ96RL7 DOC2GP-202ENST00000514950 1163 ntBASIC16.53■□□□□ 0.24
VPS13AQ96RL7 RAB35-202ENST00000534951 939 ntTSL 2 BASIC16.53■□□□□ 0.24
VPS13AQ96RL7 AC103810.3-201ENST00000583567 96 ntBASIC16.53■□□□□ 0.24
VPS13AQ96RL7 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC16.53■□□□□ 0.24
VPS13AQ96RL7 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
VPS13AQ96RL7 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC16.53■□□□□ 0.24
VPS13AQ96RL7 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS13AQ96RL7 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC16.53■□□□□ 0.24
VPS13AQ96RL7 AL355312.1-201ENST00000407115 2176 ntBASIC16.53■□□□□ 0.24
VPS13AQ96RL7 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC16.53■□□□□ 0.24
VPS13AQ96RL7 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC16.53■□□□□ 0.24
VPS13AQ96RL7 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS13AQ96RL7 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC16.53■□□□□ 0.24
VPS13AQ96RL7 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS13AQ96RL7 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VPS13AQ96RL7 RNU1-129P-201ENST00000384064 167 ntBASIC16.52■□□□□ 0.24
VPS13AQ96RL7 MIR663B-201ENST00000408361 115 ntBASIC16.52■□□□□ 0.24
VPS13AQ96RL7 U1.21-201ENST00000580816 167 ntBASIC16.52■□□□□ 0.24
VPS13AQ96RL7 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC16.52■□□□□ 0.24
VPS13AQ96RL7 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC16.52■□□□□ 0.24
VPS13AQ96RL7 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
VPS13AQ96RL7 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
VPS13AQ96RL7 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
VPS13AQ96RL7 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
VPS13AQ96RL7 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC16.52■□□□□ 0.24
VPS13AQ96RL7 APOC3-202ENST00000375345 604 ntTSL 5 BASIC16.52■□□□□ 0.24
VPS13AQ96RL7 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
VPS13AQ96RL7 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC16.52■□□□□ 0.24
VPS13AQ96RL7 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC16.52■□□□□ 0.24
VPS13AQ96RL7 MIR3615-201ENST00000581999 87 ntBASIC16.52■□□□□ 0.24
VPS13AQ96RL7 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC16.52■□□□□ 0.24
VPS13AQ96RL7 AL133215.2-201ENST00000609242 977 ntBASIC16.52■□□□□ 0.24
VPS13AQ96RL7 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.52■□□□□ 0.24
VPS13AQ96RL7 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
VPS13AQ96RL7 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
VPS13AQ96RL7 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
VPS13AQ96RL7 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC16.52■□□□□ 0.23
VPS13AQ96RL7 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
VPS13AQ96RL7 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
VPS13AQ96RL7 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
VPS13AQ96RL7 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC16.52■□□□□ 0.23
VPS13AQ96RL7 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
VPS13AQ96RL7 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC16.52■□□□□ 0.23
VPS13AQ96RL7 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
VPS13AQ96RL7 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.23
VPS13AQ96RL7 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC16.52■□□□□ 0.23
VPS13AQ96RL7 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC16.52■□□□□ 0.23
VPS13AQ96RL7 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms