Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CCDC140Q96MF4 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
CCDC140Q96MF4 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CCDC140Q96MF4 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
CCDC140Q96MF4 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CCDC140Q96MF4 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC13.13□□□□□ -0.31
CCDC140Q96MF4 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC13.13□□□□□ -0.31
CCDC140Q96MF4 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CCDC140Q96MF4 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CCDC140Q96MF4 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CCDC140Q96MF4 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
CCDC140Q96MF4 OS9-205ENST00000413095 1660 ntTSL 2 BASIC13.13□□□□□ -0.31
CCDC140Q96MF4 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC13.13□□□□□ -0.31
CCDC140Q96MF4 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CCDC140Q96MF4 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CCDC140Q96MF4 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CCDC140Q96MF4 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CCDC140Q96MF4 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC13.13□□□□□ -0.31
CCDC140Q96MF4 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC13.13□□□□□ -0.31
CCDC140Q96MF4 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC13.13□□□□□ -0.31
CCDC140Q96MF4 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC13.13□□□□□ -0.31
CCDC140Q96MF4 AL662844.1-201ENST00000546340 181 ntBASIC13.13□□□□□ -0.31
CCDC140Q96MF4 CIPC-205ENST00000555437 566 ntTSL 3 BASIC13.13□□□□□ -0.31
CCDC140Q96MF4 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC13.13□□□□□ -0.31
CCDC140Q96MF4 AP001005.1-201ENST00000571755 1248 ntBASIC13.13□□□□□ -0.31
CCDC140Q96MF4 AL121894.2-201ENST00000602977 491 ntBASIC13.13□□□□□ -0.31
CCDC140Q96MF4 REXO1L3P-201ENST00000622202 1288 ntBASIC13.13□□□□□ -0.31
CCDC140Q96MF4 AC084018.2-201ENST00000613093 2607 ntBASIC13.13□□□□□ -0.31
CCDC140Q96MF4 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC13.13□□□□□ -0.31
CCDC140Q96MF4 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CCDC140Q96MF4 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CCDC140Q96MF4 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC13.13□□□□□ -0.31
CCDC140Q96MF4 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CCDC140Q96MF4 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CCDC140Q96MF4 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
CCDC140Q96MF4 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC13.13□□□□□ -0.31
CCDC140Q96MF4 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC13.13□□□□□ -0.31
CCDC140Q96MF4 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CCDC140Q96MF4 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
CCDC140Q96MF4 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC13.13□□□□□ -0.31
CCDC140Q96MF4 LINC00895-201ENST00000629028 1637 ntBASIC13.13□□□□□ -0.31
CCDC140Q96MF4 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CCDC140Q96MF4 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CCDC140Q96MF4 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC13.13□□□□□ -0.31
CCDC140Q96MF4 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CCDC140Q96MF4 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
CCDC140Q96MF4 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CCDC140Q96MF4 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC13.12□□□□□ -0.31
CCDC140Q96MF4 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CCDC140Q96MF4 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CCDC140Q96MF4 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
CCDC140Q96MF4 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CCDC140Q96MF4 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC13.12□□□□□ -0.31
CCDC140Q96MF4 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CCDC140Q96MF4 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
CCDC140Q96MF4 CSF3-203ENST00000394148 622 ntTSL 3 BASIC13.12□□□□□ -0.31
CCDC140Q96MF4 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC13.12□□□□□ -0.31
CCDC140Q96MF4 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC13.12□□□□□ -0.31
CCDC140Q96MF4 AC098831.1-202ENST00000438821 336 ntBASIC13.12□□□□□ -0.31
CCDC140Q96MF4 AC108073.2-201ENST00000464002 357 ntBASIC13.12□□□□□ -0.31
CCDC140Q96MF4 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC13.12□□□□□ -0.31
CCDC140Q96MF4 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC13.12□□□□□ -0.31
CCDC140Q96MF4 AC107918.2-201ENST00000530817 355 ntBASIC13.12□□□□□ -0.31
CCDC140Q96MF4 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC13.12□□□□□ -0.31
CCDC140Q96MF4 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC13.12□□□□□ -0.31
CCDC140Q96MF4 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CCDC140Q96MF4 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC13.12□□□□□ -0.31
CCDC140Q96MF4 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC13.12□□□□□ -0.31
CCDC140Q96MF4 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC13.12□□□□□ -0.31
CCDC140Q96MF4 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CCDC140Q96MF4 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CCDC140Q96MF4 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC13.12□□□□□ -0.31
CCDC140Q96MF4 AL603756.1-201ENST00000606511 2163 ntBASIC13.12□□□□□ -0.31
CCDC140Q96MF4 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CCDC140Q96MF4 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC13.12□□□□□ -0.31
CCDC140Q96MF4 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CCDC140Q96MF4 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
CCDC140Q96MF4 AL391256.1-201ENST00000443260 1855 ntBASIC13.12□□□□□ -0.31
CCDC140Q96MF4 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC13.12□□□□□ -0.31
CCDC140Q96MF4 HLA-A-201ENST00000376802 1334 ntBASIC13.12□□□□□ -0.31
CCDC140Q96MF4 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
CCDC140Q96MF4 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC13.12□□□□□ -0.31
CCDC140Q96MF4 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC13.12□□□□□ -0.31
CCDC140Q96MF4 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CCDC140Q96MF4 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC13.12□□□□□ -0.31
CCDC140Q96MF4 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC13.12□□□□□ -0.31
CCDC140Q96MF4 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC13.11□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms