Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 PHF7-206ENST00000472337 387 ntTSL 58.49□□□□□ -1.054e-6■□□□□ 8.2
UPF1Q92900 ZMYM4-201ENST00000314607 6994 ntAPPRIS P1 TSL 2 BASIC7.73□□□□□ -1.174e-6■□□□□ 8.2
UPF1Q92900 ZMYM4-203ENST00000457946 6003 ntTSL 56.37□□□□□ -1.394e-6■□□□□ 8.2
UPF1Q92900 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.143e-7■□□□□ 8.2
UPF1Q92900 FN1-225ENST00000494446 676 ntTSL 211.33□□□□□ -0.67e-14■□□□□ 8.2
UPF1Q92900 EIF2S3-203ENST00000457332 215 ntTSL 510.89□□□□□ -0.674e-11■□□□□ 8.1
UPF1Q92900 EIF2S3-201ENST00000253039 2858 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.264e-11■□□□□ 8.1
UPF1Q92900 CCNT1-201ENST00000261900 6973 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.057e-8■□□□□ 8.1
UPF1Q92900 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC5.4□□□□□ -1.547e-8■□□□□ 8.1
UPF1Q92900 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC23.02■■□□□ 1.284e-7■□□□□ 8.1
UPF1Q92900 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC22.56■■□□□ 1.24e-7■□□□□ 8.1
UPF1Q92900 IDH3B-209ENST00000488299 1620 ntTSL 222.24■■□□□ 1.154e-7■□□□□ 8.1
UPF1Q92900 IDH3B-207ENST00000477689 608 ntTSL 522.17■■□□□ 1.144e-7■□□□□ 8.1
UPF1Q92900 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC21.61■■□□□ 1.054e-7■□□□□ 8.1
UPF1Q92900 PSAT1-201ENST00000347159 1411 ntTSL 1 (best) BASIC17.67■□□□□ 0.424e-7■□□□□ 8.1
UPF1Q92900 IDH3B-211ENST00000492240 964 ntTSL 517.33■□□□□ 0.364e-7■□□□□ 8.1
UPF1Q92900 IDH3B-204ENST00000466494 677 ntTSL 216.34■□□□□ 0.214e-7■□□□□ 8.1
UPF1Q92900 ALDH3A2-211ENST00000573565 577 ntTSL 412.78□□□□□ -0.364e-7■□□□□ 8.1
UPF1Q92900 ALDH3A2-214ENST00000574597 528 ntTSL 412.2□□□□□ -0.464e-7■□□□□ 8.1
UPF1Q92900 PSAT1-202ENST00000376588 2188 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.464e-7■□□□□ 8.1
UPF1Q92900 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC11.78□□□□□ -0.524e-7■□□□□ 8.1
UPF1Q92900 TMEM123-202ENST00000398136 3579 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.041e-9■□□□□ 8.1
UPF1Q92900 TMEM123-201ENST00000361236 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.071e-9■□□□□ 8.1
UPF1Q92900 PLOD2-201ENST00000282903 3732 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.151e-26■□□□□ 8.1
UPF1Q92900 PLOD2-202ENST00000360060 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.361e-26■□□□□ 8.1
UPF1Q92900 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC6.59□□□□□ -1.351e-26■□□□□ 8.1
UPF1Q92900 FAM117A-209ENST00000513602 1522 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.258e-13■□□□□ 8.1
UPF1Q92900 SERBP1-204ENST00000370995 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.138e-13■□□□□ 8.1
UPF1Q92900 SNORA12-201ENST00000391162 147 ntBASIC4.98□□□□□ -1.612e-86■□□□□ 8.1
UPF1Q92900 SLC25A37-201ENST00000290075 1889 ntTSL 1 (best)25.97■■□□□ 1.753e-20■□□□□ 8.1
UPF1Q92900 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.053e-20■□□□□ 8.1
UPF1Q92900 SLC25A37-204ENST00000518881 3404 ntTSL 1 (best)14.61□□□□□ -0.073e-20■□□□□ 8.1
UPF1Q92900 SLC25A37-211ENST00000523883 3651 ntTSL 29.85□□□□□ -0.833e-20■□□□□ 8.1
UPF1Q92900 TRRAP-203ENST00000417523 550 ntTSL 425.41■■□□□ 1.662e-7■□□□□ 8.1
UPF1Q92900 TRRAP-201ENST00000355540 12590 ntAPPRIS P3 TSL 1 (best) BASIC7.34□□□□□ -1.232e-7■□□□□ 8.1
UPF1Q92900 TRRAP-202ENST00000359863 12677 ntAPPRIS ALT2 TSL 1 (best) BASIC7.23□□□□□ -1.252e-7■□□□□ 8.1
UPF1Q92900 TRRAP-207ENST00000628380 12644 ntAPPRIS ALT2 TSL 5 BASIC7.07□□□□□ -1.282e-7■□□□□ 8.1
UPF1Q92900 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC6.02□□□□□ -1.452e-7■□□□□ 8.1
UPF1Q92900 AL020996.2-201ENST00000559265 568 ntTSL 427.44■■□□□ 1.985e-8■□□□□ 8.1
UPF1Q92900 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.115e-8■□□□□ 8.1
UPF1Q92900 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.035e-8■□□□□ 8.1
UPF1Q92900 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.175e-8■□□□□ 8.1
UPF1Q92900 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.175e-8■□□□□ 8.1
UPF1Q92900 SELENON-205ENST00000630065 2994 ntTSL 1 (best) BASIC11.23□□□□□ -0.615e-8■□□□□ 8.1
UPF1Q92900 AL020996.2-202ENST00000527604 334 ntAPPRIS P1 TSL 5 BASIC10.31□□□□□ -0.765e-8■□□□□ 8.1
UPF1Q92900 AC024940.5-201ENST00000622889 474 ntBASIC9.51□□□□□ -0.895e-8■□□□□ 8.1
UPF1Q92900 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.025e-10■□□□□ 8.1
UPF1Q92900 PRDX6-201ENST00000340385 1751 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.851e-15■□□□□ 8
UPF1Q92900 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.861e-46■□□□□ 8
UPF1Q92900 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC17.24■□□□□ 0.351e-46■□□□□ 8
UPF1Q92900 HNRNPA3-205ENST00000483137 627 ntTSL 213.23□□□□□ -0.291e-46■□□□□ 8
UPF1Q92900 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC30.92■■■□□ 2.541e-6■□□□□ 8
UPF1Q92900 ECHDC1-216ENST00000479525 1368 ntTSL 525.39■■□□□ 1.651e-6■□□□□ 8
UPF1Q92900 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC23.52■■□□□ 1.361e-6■□□□□ 8
UPF1Q92900 AZI2-203ENST00000414162 1061 ntTSL 322.36■■□□□ 1.171e-6■□□□□ 8
UPF1Q92900 AZI2-209ENST00000463512 1485 ntTSL 1 (best)18.54■□□□□ 0.561e-6■□□□□ 8
UPF1Q92900 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC17.35■□□□□ 0.371e-6■□□□□ 8
UPF1Q92900 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC16.32■□□□□ 0.21e-6■□□□□ 8
UPF1Q92900 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.21e-6■□□□□ 8
UPF1Q92900 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC15.73■□□□□ 0.111e-6■□□□□ 8
UPF1Q92900 AZI2-207ENST00000457172 1136 ntTSL 5 BASIC12.94□□□□□ -0.341e-6■□□□□ 8
UPF1Q92900 AZI2-202ENST00000334100 943 ntTSL 3 BASIC12.93□□□□□ -0.341e-6■□□□□ 8
UPF1Q92900 ECHDC1-209ENST00000454591 1515 ntTSL 2 BASIC12.78□□□□□ -0.361e-6■□□□□ 8
UPF1Q92900 ECHDC1-207ENST00000430841 1009 ntAPPRIS P3 TSL 5 BASIC12.12□□□□□ -0.471e-6■□□□□ 8
UPF1Q92900 AZI2-212ENST00000479665 4706 ntAPPRIS P1 TSL 2 BASIC10.99□□□□□ -0.651e-6■□□□□ 8
UPF1Q92900 ECHDC1-202ENST00000368289 909 ntTSL 5 BASIC10.58□□□□□ -0.721e-6■□□□□ 8
UPF1Q92900 PDAP1-205ENST00000626285 120 ntTSL 5 BASIC10.46□□□□□ -0.731e-6■□□□□ 8
UPF1Q92900 ECHDC1-206ENST00000417628 767 ntTSL 59.61□□□□□ -0.871e-6■□□□□ 8
UPF1Q92900 AZI2-208ENST00000462936 283 ntTSL 58.88□□□□□ -0.991e-6■□□□□ 8
UPF1Q92900 ECHDC1-215ENST00000475319 1543 ntTSL 28.75□□□□□ -1.011e-6■□□□□ 8
UPF1Q92900 PDAP1-203ENST00000488214 274 ntTSL 38.36□□□□□ -1.071e-6■□□□□ 8
UPF1Q92900 ECHDC1-210ENST00000454859 2341 ntAPPRIS P3 TSL 1 (best) BASIC7.9□□□□□ -1.151e-6■□□□□ 8
UPF1Q92900 MRE11-201ENST00000323929 6897 ntAPPRIS P3 TSL 1 (best) BASIC7.69□□□□□ -1.181e-6■□□□□ 8
UPF1Q92900 AZI2-201ENST00000295748 3127 ntTSL 1 (best)7.56□□□□□ -1.21e-6■□□□□ 8
UPF1Q92900 AZI2-204ENST00000415852 608 ntTSL 37.3□□□□□ -1.241e-6■□□□□ 8
UPF1Q92900 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC6.85□□□□□ -1.311e-6■□□□□ 8
UPF1Q92900 ECHDC1-205ENST00000368295 1966 ntTSL 55.8□□□□□ -1.481e-6■□□□□ 8
UPF1Q92900 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.51e-6■□□□□ 8
UPF1Q92900 NDE1-209ENST00000574109 843 ntTSL 317.71■□□□□ 0.433e-10■□□□□ 8
Retrieved 79 of 15,879 protein–RNA pairs in 248.8 ms