RNA–Protein interactions for RNA: ENST00000475319.1

ECHDC1-215, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 2

Gene ECHDC1, Length 1,543 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-215ENST00000475319 AEBP2Q6ZN18 517 aaPredicted RBP24.02■■□□□ 1.44
ECHDC1-215ENST00000475319 CHIC1Q5VXU3 224 aa22.64■■□□□ 1.21
ECHDC1-215ENST00000475319 SENP3Q9H4L4 574 aaPredicted RBP20.83■□□□□ 0.93
ECHDC1-215ENST00000475319 PHF23Q9BUL5 403 aaPredicted RBP20.36■□□□□ 0.85
ECHDC1-215ENST00000475319 POTEDQ86YR6 584 aa19.97■□□□□ 0.79
ECHDC1-215ENST00000475319 FOXD1Q16676 465 aa19.44■□□□□ 0.7
ECHDC1-215ENST00000475319 MSH5O43196 834 aa18.74■□□□□ 0.59
ECHDC1-215ENST00000475319 PIAS4Q8N2W9 510 aaPredicted RBP17.96■□□□□ 0.47
ECHDC1-215ENST00000475319 PPP6R1Q9UPN7 881 aa17.3■□□□□ 0.36
ECHDC1-215ENST00000475319 ADRA2BP18089 450 aa17.22■□□□□ 0.35
ECHDC1-215ENST00000475319 PLPPR3Q6T4P5 718 aa17.09■□□□□ 0.33
ECHDC1-215ENST00000475319 CACNB1Q02641 598 aaPredicted RBP16.71■□□□□ 0.27
ECHDC1-215ENST00000475319 DMRT2Q9Y5R5 561 aa16.31■□□□□ 0.2
ECHDC1-215ENST00000475319 MAPK8IP2Q13387 824 aaPredicted RBP16.12■□□□□ 0.17
ECHDC1-215ENST00000475319 SCAF1Q9H7N4 1312 aaKnown RBP15.99■□□□□ 0.15
ECHDC1-215ENST00000475319 RNF39Q9H2S5 420 aa15.79■□□□□ 0.12
ECHDC1-215ENST00000475319 DCAF8L1A6NGE4 600 aa15.75■□□□□ 0.11
ECHDC1-215ENST00000475319 C1QBPQ07021 282 aaKnown RBP15.59■□□□□ 0.09
ECHDC1-215ENST00000475319 POTEHQ6S545 545 aa15.48■□□□□ 0.07
ECHDC1-215ENST00000475319 HOXD11P31277 338 aaPredicted RBP15.29■□□□□ 0.04
ECHDC1-215ENST00000475319 DNAJC5BQ9UF47 199 aa15.06■□□□□ 0
ECHDC1-215ENST00000475319 RNF216Q9NWF9 866 aaPredicted RBP14.93□□□□□ -0.02
ECHDC1-215ENST00000475319 CNKSR2Q8WXI2 1034 aa14.82□□□□□ -0.04
ECHDC1-215ENST00000475319 PPP4R3CPQ6ZMV5 832 aa14.8□□□□□ -0.04
ECHDC1-215ENST00000475319 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.65□□□□□ -0.06
ECHDC1-215ENST00000475319 DSG3P32926 999 aa14.43□□□□□ -0.1
ECHDC1-215ENST00000475319 CAPN15O75808 1086 aa14.33□□□□□ -0.12
ECHDC1-215ENST00000475319 SPINK5Q9NQ38 1064 aaPredicted RBP14.19□□□□□ -0.14
ECHDC1-215ENST00000475319 U3KPZ7 1027 aaPredicted RBP14.1□□□□□ -0.15
ECHDC1-215ENST00000475319 NCBP3Q53F19 620 aaKnown RBP14.04□□□□□ -0.16
ECHDC1-215ENST00000475319 SP7Q8TDD2 431 aaPredicted RBP14.02□□□□□ -0.16
ECHDC1-215ENST00000475319 CHRDL2Q6WN34 429 aa13.95□□□□□ -0.18
ECHDC1-215ENST00000475319 RBM42Q9BTD8 480 aaKnown RBP13.94□□□□□ -0.18
ECHDC1-215ENST00000475319 APLP2Q06481 763 aa13.85□□□□□ -0.19
ECHDC1-215ENST00000475319 ABCB7O75027 752 aa13.84□□□□□ -0.19
ECHDC1-215ENST00000475319 TRHP20396 242 aaPredicted RBP13.83□□□□□ -0.2
ECHDC1-215ENST00000475319 ZNF219Q9P2Y4 722 aaPredicted RBP13.82□□□□□ -0.2
ECHDC1-215ENST00000475319 NPM3O75607 178 aaKnown RBP13.66□□□□□ -0.22
ECHDC1-215ENST00000475319 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.53□□□□□ -0.24
ECHDC1-215ENST00000475319 HNRNPUL2Q1KMD3 747 aaKnown RBP13.53□□□□□ -0.24
ECHDC1-215ENST00000475319 HAX1O00165 279 aa13.49□□□□□ -0.25
ECHDC1-215ENST00000475319 PIP4P2Q8N4L2 257 aa13.36□□□□□ -0.27
ECHDC1-215ENST00000475319 SAMD1Q6SPF0 538 aaPredicted RBP13.35□□□□□ -0.27
ECHDC1-215ENST00000475319 AKT1S1Q96B36 256 aa13.34□□□□□ -0.27
ECHDC1-215ENST00000475319 SLC4A2P04920 1241 aa13.28□□□□□ -0.28
ECHDC1-215ENST00000475319 PLSCR2Q9NRY7 297 aa13.22□□□□□ -0.29
ECHDC1-215ENST00000475319 POLA2Q14181 598 aa13.2□□□□□ -0.3
ECHDC1-215ENST00000475319 REM2Q8IYK8 340 aaPredicted RBP13.17□□□□□ -0.3
ECHDC1-215ENST00000475319 LHX8Q68G74 356 aa13.15□□□□□ -0.3
ECHDC1-215ENST00000475319 FXR2P51116 673 aaKnown RBP eCLIP13.13□□□□□ -0.31
ECHDC1-215ENST00000475319 EVX2Q03828 476 aa13.07□□□□□ -0.32
ECHDC1-215ENST00000475319 PITPNM1O00562 1244 aa13□□□□□ -0.33
ECHDC1-215ENST00000475319 EHMT2Q96KQ7 1210 aa13□□□□□ -0.33
ECHDC1-215ENST00000475319 ZBTB12Q9Y330 459 aaPredicted RBP12.98□□□□□ -0.33
ECHDC1-215ENST00000475319 KCNA4P22459 653 aa12.94□□□□□ -0.34
ECHDC1-215ENST00000475319 GABBR2O75899 941 aa12.83□□□□□ -0.36
ECHDC1-215ENST00000475319 OSCARQ8IYS5 282 aa12.78□□□□□ -0.36
ECHDC1-215ENST00000475319 C19orf67A6NJJ6 358 aa12.75□□□□□ -0.37
ECHDC1-215ENST00000475319 MYCNP04198 464 aaPredicted RBP12.74□□□□□ -0.37
ECHDC1-215ENST00000475319 PRKAR2AP13861 404 aaKnown RBP12.71□□□□□ -0.38
ECHDC1-215ENST00000475319 CLEC11AQ9Y240 323 aa12.49□□□□□ -0.41
ECHDC1-215ENST00000475319 SPDYE1Q8NFV5 336 aaPredicted RBP12.48□□□□□ -0.41
ECHDC1-215ENST00000475319 CSRNP3Q8WYN3 585 aa12.47□□□□□ -0.41
ECHDC1-215ENST00000475319 POTEIP0CG38 1075 aa12.46□□□□□ -0.42
ECHDC1-215ENST00000475319 CLCN6P51797 869 aa12.43□□□□□ -0.42
ECHDC1-215ENST00000475319 SPDYE2BA6NHP3 402 aa12.42□□□□□ -0.42
ECHDC1-215ENST00000475319 POTEMA6NI47 508 aa12.42□□□□□ -0.42
ECHDC1-215ENST00000475319 SPDYE6P0CI01 402 aa12.42□□□□□ -0.42
ECHDC1-215ENST00000475319 SPDYE2Q495Y8 402 aa12.42□□□□□ -0.42
ECHDC1-215ENST00000475319 SLC4A1APQ9BWU0 796 aaKnown RBP12.42□□□□□ -0.42
ECHDC1-215ENST00000475319 PCDH10Q9P2E7 1040 aa12.42□□□□□ -0.42
ECHDC1-215ENST00000475319 ATF5Q9Y2D1 282 aaPredicted RBP12.38□□□□□ -0.43
ECHDC1-215ENST00000475319 POTEGQ6S5H5 508 aa12.35□□□□□ -0.43
ECHDC1-215ENST00000475319 DCBLD2Q96PD2 775 aa12.35□□□□□ -0.43
ECHDC1-215ENST00000475319 CHADLQ6NUI6 762 aa12.27□□□□□ -0.44
ECHDC1-215ENST00000475319 CD44P16070 742 aaKnown RBP12.25□□□□□ -0.45
ECHDC1-215ENST00000475319 OTUD5Q96G74 571 aa12.24□□□□□ -0.45
ECHDC1-215ENST00000475319 FBLN2P98095 1184 aa12.19□□□□□ -0.46
ECHDC1-215ENST00000475319 PRR29P0C7W0 189 aa12.16□□□□□ -0.46
ECHDC1-215ENST00000475319 ZNF692Q9BU19 519 aaPredicted RBP12.11□□□□□ -0.47
ECHDC1-215ENST00000475319 SSUH2Q9Y2M2 353 aa12.06□□□□□ -0.48
ECHDC1-215ENST00000475319 FARP1Q9Y4F1 1045 aaPredicted RBP12.04□□□□□ -0.48
ECHDC1-215ENST00000475319 POTEB2H3BUK9 544 aa12.01□□□□□ -0.49
ECHDC1-215ENST00000475319 FOXD4L1Q9NU39 408 aa12.01□□□□□ -0.49
ECHDC1-215ENST00000475319 ZNF579Q8NAF0 562 aaKnown RBP12□□□□□ -0.49
ECHDC1-215ENST00000475319 ZBTB22O15209 634 aa11.95□□□□□ -0.5
ECHDC1-215ENST00000475319 ZRANB1Q9UGI0 708 aa11.92□□□□□ -0.5
ECHDC1-215ENST00000475319 MAMSTRQ6ZN01 415 aa11.89□□□□□ -0.51
ECHDC1-215ENST00000475319 GALR2O43603 387 aaPredicted RBP11.86□□□□□ -0.51
ECHDC1-215ENST00000475319 FAM163AQ96GL9 167 aaPredicted RBP11.86□□□□□ -0.51
ECHDC1-215ENST00000475319 PABPN1Q86U42 306 aaKnown RBP eCLIP11.85□□□□□ -0.51
ECHDC1-215ENST00000475319 ATXN8OSP0DMR3 200 aa11.81□□□□□ -0.52
ECHDC1-215ENST00000475319 MKRN4PQ13434 485 aaPredicted RBP11.76□□□□□ -0.53
ECHDC1-215ENST00000475319 LCE2DQ5TA82 110 aaPredicted RBP11.76□□□□□ -0.53
ECHDC1-215ENST00000475319 SCUBE2Q9NQ36 999 aa11.72□□□□□ -0.53
ECHDC1-215ENST00000475319 C7P10643 843 aa11.71□□□□□ -0.53
ECHDC1-215ENST00000475319 METRNQ9UJH8 293 aa11.71□□□□□ -0.53
ECHDC1-215ENST00000475319 PAK3O75914 559 aaPredicted RBP11.7□□□□□ -0.54
ECHDC1-215ENST00000475319 CDAN1Q8IWY9 1227 aa11.7□□□□□ -0.54
ECHDC1-215ENST00000475319 SLC39A7Q92504 469 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms