RNA–Protein interactions for RNA: ENST00000368295.8

ECHDC1-205, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 5

Gene ECHDC1, Length 1,966 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-205ENST00000368295 AEBP2Q6ZN18 517 aaPredicted RBP14.71□□□□□ -0.06
ECHDC1-205ENST00000368295 POTEDQ86YR6 584 aa14.34□□□□□ -0.11
ECHDC1-205ENST00000368295 CHIC1Q5VXU3 224 aa13.91□□□□□ -0.18
ECHDC1-205ENST00000368295 SENP3Q9H4L4 574 aaPredicted RBP12.83□□□□□ -0.35
ECHDC1-205ENST00000368295 PHF23Q9BUL5 403 aaPredicted RBP12.47□□□□□ -0.41
ECHDC1-205ENST00000368295 FOXD1Q16676 465 aa11.94□□□□□ -0.5
ECHDC1-205ENST00000368295 MSH5O43196 834 aa11.76□□□□□ -0.53
ECHDC1-205ENST00000368295 CACNB1Q02641 598 aaPredicted RBP11.08□□□□□ -0.64
ECHDC1-205ENST00000368295 PIAS4Q8N2W9 510 aaPredicted RBP11.01□□□□□ -0.65
ECHDC1-205ENST00000368295 POTEHQ6S545 545 aa10.92□□□□□ -0.66
ECHDC1-205ENST00000368295 PPP6R1Q9UPN7 881 aa10.5□□□□□ -0.73
ECHDC1-205ENST00000368295 ADRA2BP18089 450 aa10.44□□□□□ -0.74
ECHDC1-205ENST00000368295 PLPPR3Q6T4P5 718 aa10.34□□□□□ -0.75
ECHDC1-205ENST00000368295 DMRT2Q9Y5R5 561 aa10.03□□□□□ -0.8
ECHDC1-205ENST00000368295 MAPK8IP2Q13387 824 aaPredicted RBP9.79□□□□□ -0.84
ECHDC1-205ENST00000368295 RNF39Q9H2S5 420 aa9.76□□□□□ -0.85
ECHDC1-205ENST00000368295 SCAF1Q9H7N4 1312 aaKnown RBP9.76□□□□□ -0.85
ECHDC1-205ENST00000368295 PLSCR2Q9NRY7 297 aa9.72□□□□□ -0.85
ECHDC1-205ENST00000368295 C1QBPQ07021 282 aaKnown RBP9.64□□□□□ -0.87
ECHDC1-205ENST00000368295 DCAF8L1A6NGE4 600 aa9.6□□□□□ -0.87
ECHDC1-205ENST00000368295 SP7Q8TDD2 431 aaPredicted RBP9.42□□□□□ -0.9
ECHDC1-205ENST00000368295 HOXD11P31277 338 aaPredicted RBP9.35□□□□□ -0.91
ECHDC1-205ENST00000368295 DNAJC5BQ9UF47 199 aa9.3□□□□□ -0.92
ECHDC1-205ENST00000368295 RNF216Q9NWF9 866 aaPredicted RBP9.09□□□□□ -0.95
ECHDC1-205ENST00000368295 CNKSR2Q8WXI2 1034 aa8.97□□□□□ -0.97
ECHDC1-205ENST00000368295 PPP4R3CPQ6ZMV5 832 aa8.91□□□□□ -0.98
ECHDC1-205ENST00000368295 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.9□□□□□ -0.988e-8■■■■□ 21.5
ECHDC1-205ENST00000368295 DSG3P32926 999 aa8.86□□□□□ -0.99
ECHDC1-205ENST00000368295 LHX8Q68G74 356 aa8.79□□□□□ -1
ECHDC1-205ENST00000368295 CAPN15O75808 1086 aa8.74□□□□□ -1.01
ECHDC1-205ENST00000368295 CHRDL2Q6WN34 429 aa8.72□□□□□ -1.01
ECHDC1-205ENST00000368295 SPINK5Q9NQ38 1064 aaPredicted RBP8.64□□□□□ -1.03
ECHDC1-205ENST00000368295 RBM42Q9BTD8 480 aaKnown RBP8.61□□□□□ -1.03
ECHDC1-205ENST00000368295 U3KPZ7 1027 aaPredicted RBP8.58□□□□□ -1.04
ECHDC1-205ENST00000368295 PCDH10Q9P2E7 1040 aa8.54□□□□□ -1.04
ECHDC1-205ENST00000368295 KCNA4P22459 653 aa8.51□□□□□ -1.05
ECHDC1-205ENST00000368295 APLP2Q06481 763 aa8.48□□□□□ -1.05
ECHDC1-205ENST00000368295 NCBP3Q53F19 620 aaKnown RBP8.47□□□□□ -1.05
ECHDC1-205ENST00000368295 ZNF219Q9P2Y4 722 aaPredicted RBP8.44□□□□□ -1.06
ECHDC1-205ENST00000368295 HAX1O00165 279 aa8.44□□□□□ -1.06
ECHDC1-205ENST00000368295 ABCB7O75027 752 aa8.4□□□□□ -1.06
ECHDC1-205ENST00000368295 TRHP20396 242 aaPredicted RBP8.39□□□□□ -1.07
ECHDC1-205ENST00000368295 POTEMA6NI47 508 aa8.35□□□□□ -1.07
ECHDC1-205ENST00000368295 NPM3O75607 178 aaKnown RBP8.29□□□□□ -1.08
ECHDC1-205ENST00000368295 POTEGQ6S5H5 508 aa8.26□□□□□ -1.09
ECHDC1-205ENST00000368295 DNAJC5Q9H3Z4 198 aa8.25□□□□□ -1.09
ECHDC1-205ENST00000368295 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.22□□□□□ -1.09
ECHDC1-205ENST00000368295 HNRNPUL2Q1KMD3 747 aaKnown RBP8.22□□□□□ -1.09
ECHDC1-205ENST00000368295 PIP4P2Q8N4L2 257 aa8.22□□□□□ -1.09
ECHDC1-205ENST00000368295 ABCC9O60706 1549 aa8.21□□□□□ -1.09
ECHDC1-205ENST00000368295 AKT1S1Q96B36 256 aa8.19□□□□□ -1.1
ECHDC1-205ENST00000368295 SLC4A1APQ9BWU0 796 aaKnown RBP8.16□□□□□ -1.1
ECHDC1-205ENST00000368295 SAMD1Q6SPF0 538 aaPredicted RBP8.1□□□□□ -1.11
ECHDC1-205ENST00000368295 FXR2P51116 673 aaKnown RBP eCLIP8.08□□□□□ -1.12
ECHDC1-205ENST00000368295 REM2Q8IYK8 340 aaPredicted RBP8.06□□□□□ -1.12
ECHDC1-205ENST00000368295 EVX2Q03828 476 aa8.04□□□□□ -1.12
ECHDC1-205ENST00000368295 EHMT2Q96KQ7 1210 aa8.01□□□□□ -1.13
ECHDC1-205ENST00000368295 SLC4A2P04920 1241 aa7.99□□□□□ -1.13
ECHDC1-205ENST00000368295 POLA2Q14181 598 aa7.99□□□□□ -1.13
ECHDC1-205ENST00000368295 PITPNM1O00562 1244 aa7.96□□□□□ -1.14
ECHDC1-205ENST00000368295 ZBTB12Q9Y330 459 aaPredicted RBP7.92□□□□□ -1.14
ECHDC1-205ENST00000368295 GABBR2O75899 941 aa7.91□□□□□ -1.14
ECHDC1-205ENST00000368295 C19orf67A6NJJ6 358 aa7.86□□□□□ -1.15
ECHDC1-205ENST00000368295 CSRNP3Q8WYN3 585 aa7.86□□□□□ -1.15
ECHDC1-205ENST00000368295 FOXD4L1Q9NU39 408 aa7.85□□□□□ -1.15
ECHDC1-205ENST00000368295 ZBTB22O15209 634 aa7.81□□□□□ -1.16
ECHDC1-205ENST00000368295 PRKAR2AP13861 404 aaKnown RBP7.76□□□□□ -1.17
ECHDC1-205ENST00000368295 NISCHQ9Y2I1 1504 aa7.76□□□□□ -1.17
ECHDC1-205ENST00000368295 OSCARQ8IYS5 282 aa7.74□□□□□ -1.17
ECHDC1-205ENST00000368295 OTUD5Q96G74 571 aa7.73□□□□□ -1.17
ECHDC1-205ENST00000368295 MYCNP04198 464 aaPredicted RBP7.7□□□□□ -1.18
ECHDC1-205ENST00000368295 CLCN6P51797 869 aa7.7□□□□□ -1.18
ECHDC1-205ENST00000368295 TRIM41Q8WV44 630 aa7.69□□□□□ -1.18
ECHDC1-205ENST00000368295 POTEIP0CG38 1075 aa7.67□□□□□ -1.18
ECHDC1-205ENST00000368295 SPDYE1Q8NFV5 336 aaPredicted RBP7.61□□□□□ -1.19
ECHDC1-205ENST00000368295 PABPN1Q86U42 306 aaKnown RBP eCLIP7.59□□□□□ -1.19
ECHDC1-205ENST00000368295 ATXN8OSP0DMR3 200 aa7.58□□□□□ -1.2
ECHDC1-205ENST00000368295 DCBLD2Q96PD2 775 aa7.57□□□□□ -1.2
ECHDC1-205ENST00000368295 MMRN1Q13201 1228 aa7.57□□□□□ -1.2
ECHDC1-205ENST00000368295 CLEC11AQ9Y240 323 aa7.55□□□□□ -1.2
ECHDC1-205ENST00000368295 SPDYE2BA6NHP3 402 aa7.55□□□□□ -1.2
ECHDC1-205ENST00000368295 SPDYE6P0CI01 402 aa7.55□□□□□ -1.2
ECHDC1-205ENST00000368295 SPDYE2Q495Y8 402 aa7.55□□□□□ -1.2
ECHDC1-205ENST00000368295 CDAN1Q8IWY9 1227 aa7.55□□□□□ -1.2
ECHDC1-205ENST00000368295 CD44P16070 742 aaKnown RBP7.48□□□□□ -1.21
ECHDC1-205ENST00000368295 LCE2DQ5TA82 110 aaPredicted RBP7.48□□□□□ -1.21
ECHDC1-205ENST00000368295 ATF5Q9Y2D1 282 aaPredicted RBP7.44□□□□□ -1.22
ECHDC1-205ENST00000368295 CHADLQ6NUI6 762 aa7.42□□□□□ -1.22
ECHDC1-205ENST00000368295 CECR2Q9BXF3 1484 aa7.42□□□□□ -1.22
ECHDC1-205ENST00000368295 FAM163AQ96GL9 167 aaPredicted RBP7.39□□□□□ -1.23
ECHDC1-205ENST00000368295 POTEB2H3BUK9 544 aa7.37□□□□□ -1.23
ECHDC1-205ENST00000368295 SPNS2Q8IVW8 549 aa7.37□□□□□ -1.23
ECHDC1-205ENST00000368295 PRR29P0C7W0 189 aa7.36□□□□□ -1.23
ECHDC1-205ENST00000368295 ZNF579Q8NAF0 562 aaKnown RBP7.36□□□□□ -1.23
ECHDC1-205ENST00000368295 FBLN2P98095 1184 aa7.35□□□□□ -1.23
ECHDC1-205ENST00000368295 MAMSTRQ6ZN01 415 aa7.35□□□□□ -1.23
ECHDC1-205ENST00000368295 FARP1Q9Y4F1 1045 aaPredicted RBP7.33□□□□□ -1.24
ECHDC1-205ENST00000368295 SSUH2Q9Y2M2 353 aa7.31□□□□□ -1.24
ECHDC1-205ENST00000368295 ILDR1Q86SU0 546 aaPredicted RBP7.31□□□□□ -1.24
ECHDC1-205ENST00000368295 SLC24A1O60721 1099 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms