RNA–Protein interactions for RNA: ENST00000368289.6

ECHDC1-202, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 5 BASIC

Gene ECHDC1, Length 909 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-202ENST00000368289 AEBP2Q6ZN18 517 aaPredicted RBP22.25■■□□□ 1.15
ECHDC1-202ENST00000368289 CHIC1Q5VXU3 224 aa21.99■■□□□ 1.11
ECHDC1-202ENST00000368289 PHF23Q9BUL5 403 aaPredicted RBP19.28■□□□□ 0.68
ECHDC1-202ENST00000368289 SENP3Q9H4L4 574 aaPredicted RBP19■□□□□ 0.63
ECHDC1-202ENST00000368289 PLPPR3Q6T4P5 718 aa18■□□□□ 0.47
ECHDC1-202ENST00000368289 FOXD1Q16676 465 aa17.52■□□□□ 0.4
ECHDC1-202ENST00000368289 ADRA2BP18089 450 aa16.97■□□□□ 0.31
ECHDC1-202ENST00000368289 PPP6R1Q9UPN7 881 aa16.94■□□□□ 0.3
ECHDC1-202ENST00000368289 PIAS4Q8N2W9 510 aaPredicted RBP16.61■□□□□ 0.25
ECHDC1-202ENST00000368289 MSH5O43196 834 aa16.21■□□□□ 0.19
ECHDC1-202ENST00000368289 PPP4R3CPQ6ZMV5 832 aa15.84■□□□□ 0.13
ECHDC1-202ENST00000368289 SCAF1Q9H7N4 1312 aaKnown RBP15.7■□□□□ 0.1
ECHDC1-202ENST00000368289 NISCHQ9Y2I1 1504 aa15.67■□□□□ 0.1
ECHDC1-202ENST00000368289 KCNA4P22459 653 aa15.59■□□□□ 0.09
ECHDC1-202ENST00000368289 NCBP3Q53F19 620 aaKnown RBP15.57■□□□□ 0.08
ECHDC1-202ENST00000368289 DNAJC5BQ9UF47 199 aa15.44■□□□□ 0.06
ECHDC1-202ENST00000368289 CNKSR2Q8WXI2 1034 aa15.4■□□□□ 0.06
ECHDC1-202ENST00000368289 ABCC9O60706 1549 aa15.33■□□□□ 0.05
ECHDC1-202ENST00000368289 MAPK8IP2Q13387 824 aaPredicted RBP15.32■□□□□ 0.04
ECHDC1-202ENST00000368289 NPM3O75607 178 aaKnown RBP15.21■□□□□ 0.03
ECHDC1-202ENST00000368289 DMRT2Q9Y5R5 561 aa15.15■□□□□ 0.02
ECHDC1-202ENST00000368289 RNF216Q9NWF9 866 aaPredicted RBP15.05■□□□□ -0
ECHDC1-202ENST00000368289 SLC4A1APQ9BWU0 796 aaKnown RBP14.95□□□□□ -0.02
ECHDC1-202ENST00000368289 HOXD11P31277 338 aaPredicted RBP14.91□□□□□ -0.02
ECHDC1-202ENST00000368289 DNAJC5Q9H3Z4 198 aa14.66□□□□□ -0.06
ECHDC1-202ENST00000368289 EHMT2Q96KQ7 1210 aa14.65□□□□□ -0.06
ECHDC1-202ENST00000368289 DCAF8L1A6NGE4 600 aa14.51□□□□□ -0.09
ECHDC1-202ENST00000368289 CSRNP3Q8WYN3 585 aa14.41□□□□□ -0.1
ECHDC1-202ENST00000368289 FOXD4L1Q9NU39 408 aa14.38□□□□□ -0.11
ECHDC1-202ENST00000368289 POTEDQ86YR6 584 aa14.37□□□□□ -0.11
ECHDC1-202ENST00000368289 ZBTB22O15209 634 aa14.29□□□□□ -0.12
ECHDC1-202ENST00000368289 SLC4A2P04920 1241 aa14.29□□□□□ -0.12
ECHDC1-202ENST00000368289 CCDC180Q9P1Z9 1646 aa14.28□□□□□ -0.12
ECHDC1-202ENST00000368289 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.25□□□□□ -0.138e-8■■■□□ 16.3
ECHDC1-202ENST00000368289 PABPN1Q86U42 306 aaKnown RBP eCLIP14.22□□□□□ -0.13
ECHDC1-202ENST00000368289 MYCNP04198 464 aaPredicted RBP14.12□□□□□ -0.15
ECHDC1-202ENST00000368289 RB1CC1Q8TDY2 1594 aa14.05□□□□□ -0.16
ECHDC1-202ENST00000368289 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14□□□□□ -0.17
ECHDC1-202ENST00000368289 HNRNPUL2Q1KMD3 747 aaKnown RBP14□□□□□ -0.17
ECHDC1-202ENST00000368289 U3KPZ7 1027 aaPredicted RBP13.96□□□□□ -0.17
ECHDC1-202ENST00000368289 ATXN8OSP0DMR3 200 aa13.92□□□□□ -0.18
ECHDC1-202ENST00000368289 SAMD1Q6SPF0 538 aaPredicted RBP13.92□□□□□ -0.18
ECHDC1-202ENST00000368289 BICRAQ9NZM4 1560 aa13.88□□□□□ -0.19
ECHDC1-202ENST00000368289 CECR2Q9BXF3 1484 aa13.88□□□□□ -0.19
ECHDC1-202ENST00000368289 APLP2Q06481 763 aa13.86□□□□□ -0.19
ECHDC1-202ENST00000368289 RNF39Q9H2S5 420 aa13.83□□□□□ -0.2
ECHDC1-202ENST00000368289 UNC13AQ9UPW8 1703 aa13.8□□□□□ -0.2
ECHDC1-202ENST00000368289 NACADO15069 1562 aa13.77□□□□□ -0.21
ECHDC1-202ENST00000368289 CC2D2AQ9P2K1 1620 aa13.77□□□□□ -0.21
ECHDC1-202ENST00000368289 C1QBPQ07021 282 aaKnown RBP13.75□□□□□ -0.21
ECHDC1-202ENST00000368289 ATF5Q9Y2D1 282 aaPredicted RBP13.6□□□□□ -0.23
ECHDC1-202ENST00000368289 DCAF8L2P0C7V8 631 aa13.56□□□□□ -0.24
ECHDC1-202ENST00000368289 TRIM41Q8WV44 630 aa13.56□□□□□ -0.24
ECHDC1-202ENST00000368289 ZNF219Q9P2Y4 722 aaPredicted RBP13.55□□□□□ -0.24
ECHDC1-202ENST00000368289 CAPN15O75808 1086 aa13.52□□□□□ -0.25
ECHDC1-202ENST00000368289 EIF4G1Q04637 1599 aaKnown RBP13.52□□□□□ -0.25
ECHDC1-202ENST00000368289 SPINK5Q9NQ38 1064 aaPredicted RBP13.5□□□□□ -0.25
ECHDC1-202ENST00000368289 CUX2O14529 1486 aa13.48□□□□□ -0.25
ECHDC1-202ENST00000368289 TRHP20396 242 aaPredicted RBP13.48□□□□□ -0.25
ECHDC1-202ENST00000368289 CACNB1Q02641 598 aaPredicted RBP13.4□□□□□ -0.26
ECHDC1-202ENST00000368289 SHROOM4Q9ULL8 1493 aa13.38□□□□□ -0.27
ECHDC1-202ENST00000368289 MYO15BQ96JP2 1530 aa13.32□□□□□ -0.28
ECHDC1-202ENST00000368289 POLA2Q14181 598 aa13.29□□□□□ -0.28
ECHDC1-202ENST00000368289 ABCB7O75027 752 aa13.22□□□□□ -0.29
ECHDC1-202ENST00000368289 DSG3P32926 999 aa13.21□□□□□ -0.29
ECHDC1-202ENST00000368289 FBLN2P98095 1184 aa13.19□□□□□ -0.3
ECHDC1-202ENST00000368289 ZBTB12Q9Y330 459 aaPredicted RBP13.19□□□□□ -0.3
ECHDC1-202ENST00000368289 ERCC6Q03468 1493 aa13.16□□□□□ -0.3
ECHDC1-202ENST00000368289 SCRIBQ14160 1630 aa13.09□□□□□ -0.31
ECHDC1-202ENST00000368289 FKBP8Q14318 412 aa13.06□□□□□ -0.32
ECHDC1-202ENST00000368289 MKRN4PQ13434 485 aaPredicted RBP13.03□□□□□ -0.32
ECHDC1-202ENST00000368289 NESP48681 1621 aa12.99□□□□□ -0.33
ECHDC1-202ENST00000368289 THOC2Q8NI27 1593 aaKnown RBP12.94□□□□□ -0.34
ECHDC1-202ENST00000368289 SPDYE4A6NLX3 237 aa12.91□□□□□ -0.34
ECHDC1-202ENST00000368289 NCAPD3P42695 1498 aa12.84□□□□□ -0.35
ECHDC1-202ENST00000368289 DCAF1Q9Y4B6 1507 aa12.83□□□□□ -0.35
ECHDC1-202ENST00000368289 SPDYE2BA6NHP3 402 aa12.81□□□□□ -0.36
ECHDC1-202ENST00000368289 SPDYE6P0CI01 402 aa12.81□□□□□ -0.36
ECHDC1-202ENST00000368289 SPDYE2Q495Y8 402 aa12.81□□□□□ -0.36
ECHDC1-202ENST00000368289 OSCARQ8IYS5 282 aa12.79□□□□□ -0.36
ECHDC1-202ENST00000368289 ZCCHC6Q5VYS8 1495 aaKnown RBP12.78□□□□□ -0.36
ECHDC1-202ENST00000368289 ZNF692Q9BU19 519 aaPredicted RBP12.77□□□□□ -0.37
ECHDC1-202ENST00000368289 SMARCA2P51531 1590 aa12.73□□□□□ -0.37
ECHDC1-202ENST00000368289 RIMBP3CA6NJZ7 1639 aa12.7□□□□□ -0.38
ECHDC1-202ENST00000368289 RIMBP3BA6NNM3 1639 aa12.7□□□□□ -0.38
ECHDC1-202ENST00000368289 RIMBP3Q9UFD9 1639 aa12.7□□□□□ -0.38
ECHDC1-202ENST00000368289 BAZ1AQ9NRL2 1556 aaPredicted RBP12.7□□□□□ -0.38
ECHDC1-202ENST00000368289 RBM42Q9BTD8 480 aaKnown RBP12.7□□□□□ -0.38
ECHDC1-202ENST00000368289 ILDR1Q86SU0 546 aaPredicted RBP12.69□□□□□ -0.38
ECHDC1-202ENST00000368289 ATAD2BQ9ULI0 1458 aa12.68□□□□□ -0.38
ECHDC1-202ENST00000368289 PROM2Q8N271 834 aa12.68□□□□□ -0.38
ECHDC1-202ENST00000368289 FBXO3Q9UK99 471 aa12.66□□□□□ -0.38
ECHDC1-202ENST00000368289 SSUH2Q9Y2M2 353 aa12.66□□□□□ -0.38
ECHDC1-202ENST00000368289 KIF21AQ7Z4S6 1674 aa12.64□□□□□ -0.39
ECHDC1-202ENST00000368289 ARHGEF11O15085 1522 aa12.59□□□□□ -0.39
ECHDC1-202ENST00000368289 CYB5RLQ6IPT4 315 aa12.57□□□□□ -0.4
ECHDC1-202ENST00000368289 HMGXB3Q12766 1538 aa12.57□□□□□ -0.4
ECHDC1-202ENST00000368289 LAMC3Q9Y6N6 1575 aa12.56□□□□□ -0.4
ECHDC1-202ENST00000368289 AKT1S1Q96B36 256 aa12.55□□□□□ -0.4
ECHDC1-202ENST00000368289 PDS5BQ9NTI5 1447 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms