RNA–Protein interactions for RNA: ENST00000531967.5

ECHDC1-222, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene ECHDC1, Length 2,585 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-222ENST00000531967 CHIC1Q5VXU3 224 aa12.56□□□□□ -0.4
ECHDC1-222ENST00000531967 AEBP2Q6ZN18 517 aaPredicted RBP11.81□□□□□ -0.52
ECHDC1-222ENST00000531967 SLC24A1O60721 1099 aa11.66□□□□□ -0.54
ECHDC1-222ENST00000531967 EHMT2Q96KQ7 1210 aa11.35□□□□□ -0.59
ECHDC1-222ENST00000531967 PHF23Q9BUL5 403 aaPredicted RBP11.21□□□□□ -0.61
ECHDC1-222ENST00000531967 PLPPR3Q6T4P5 718 aa10.81□□□□□ -0.68
ECHDC1-222ENST00000531967 RTN4Q9NQC3 1192 aaKnown RBP10.74□□□□□ -0.69
ECHDC1-222ENST00000531967 CSRNP3Q8WYN3 585 aa10.69□□□□□ -0.7
ECHDC1-222ENST00000531967 KCNA4P22459 653 aa10.66□□□□□ -0.7
ECHDC1-222ENST00000531967 AMER1Q5JTC6 1135 aaPredicted RBP10.66□□□□□ -0.7
ECHDC1-222ENST00000531967 NCBP3Q53F19 620 aaKnown RBP10.45□□□□□ -0.74
ECHDC1-222ENST00000531967 SLC4A1APQ9BWU0 796 aaKnown RBP10.31□□□□□ -0.76
ECHDC1-222ENST00000531967 DAXXQ9UER7 740 aaPredicted RBP10.31□□□□□ -0.76
ECHDC1-222ENST00000531967 PRKCSHP14314 528 aaPredicted RBP10.08□□□□□ -0.8
ECHDC1-222ENST00000531967 ADRA2BP18089 450 aa10.03□□□□□ -0.8
ECHDC1-222ENST00000531967 ARXQ96QS3 562 aa9.92□□□□□ -0.82
ECHDC1-222ENST00000531967 TAOK2Q9UL54 1235 aa9.9□□□□□ -0.82
ECHDC1-222ENST00000531967 BCANQ96GW7 911 aa9.87□□□□□ -0.83
ECHDC1-222ENST00000531967 ZBTB22O15209 634 aa9.85□□□□□ -0.83
ECHDC1-222ENST00000531967 TIMELESSQ9UNS1 1208 aa9.81□□□□□ -0.84
ECHDC1-222ENST00000531967 PLCB2Q00722 1185 aa9.77□□□□□ -0.84
ECHDC1-222ENST00000531967 SENP3Q9H4L4 574 aaPredicted RBP9.75□□□□□ -0.85
ECHDC1-222ENST00000531967 TPRNQ4KMQ1 711 aa9.71□□□□□ -0.86
ECHDC1-222ENST00000531967 TULP1O00294 542 aaPredicted RBP9.69□□□□□ -0.86
ECHDC1-222ENST00000531967 HAP1P54257 671 aaPredicted RBP9.64□□□□□ -0.87
ECHDC1-222ENST00000531967 HOMEZQ8IX15 550 aa9.62□□□□□ -0.87
ECHDC1-222ENST00000531967 FKBP8Q14318 412 aa9.58□□□□□ -0.88
ECHDC1-222ENST00000531967 NPM3O75607 178 aaKnown RBP9.58□□□□□ -0.88
ECHDC1-222ENST00000531967 PPP4R3CPQ6ZMV5 832 aa9.57□□□□□ -0.88
ECHDC1-222ENST00000531967 PPP6R1Q9UPN7 881 aa9.54□□□□□ -0.88
ECHDC1-222ENST00000531967 RANGAP1P46060 587 aaPredicted RBP9.51□□□□□ -0.89
ECHDC1-222ENST00000531967 GTF3C3Q9Y5Q9 886 aa9.5□□□□□ -0.89
ECHDC1-222ENST00000531967 VSIG10Q8N0Z9 540 aa9.5□□□□□ -0.89
ECHDC1-222ENST00000531967 ERICH6Q7L0X2 663 aa9.48□□□□□ -0.89
ECHDC1-222ENST00000531967 FOXD4L1Q9NU39 408 aa9.44□□□□□ -0.9
ECHDC1-222ENST00000531967 APLP2Q06481 763 aa9.33□□□□□ -0.92
ECHDC1-222ENST00000531967 PODXL2Q9NZ53 605 aa9.31□□□□□ -0.92
ECHDC1-222ENST00000531967 TMEM132AQ24JP5 1023 aa9.3□□□□□ -0.92
ECHDC1-222ENST00000531967 KDM2AQ9Y2K7 1162 aa9.3□□□□□ -0.92
ECHDC1-222ENST00000531967 TTBK1Q5TCY1 1321 aaPredicted RBP9.25□□□□□ -0.93
ECHDC1-222ENST00000531967 PELP1Q8IZL8 1130 aaKnown RBP9.24□□□□□ -0.93
ECHDC1-222ENST00000531967 C14orf37Q86TY3 774 aa9.22□□□□□ -0.93
ECHDC1-222ENST00000531967 FBLN2P98095 1184 aa9.2□□□□□ -0.94
ECHDC1-222ENST00000531967 DCAF8L2P0C7V8 631 aa9.19□□□□□ -0.94
ECHDC1-222ENST00000531967 KLHL34Q8N239 644 aa9.18□□□□□ -0.94
ECHDC1-222ENST00000531967 MYT1Q01538 1121 aa9.13□□□□□ -0.95
ECHDC1-222ENST00000531967 NPM2Q86SE8 214 aaKnown RBP9.1□□□□□ -0.95
ECHDC1-222ENST00000531967 CNKSR2Q8WXI2 1034 aa9.03□□□□□ -0.96
ECHDC1-222ENST00000531967 FBXO3Q9UK99 471 aa9.03□□□□□ -0.96
ECHDC1-222ENST00000531967 DNAJC5BQ9UF47 199 aa9.01□□□□□ -0.97
ECHDC1-222ENST00000531967 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.01□□□□□ -0.97
ECHDC1-222ENST00000531967 NBR1Q14596 966 aa9□□□□□ -0.97
ECHDC1-222ENST00000531967 SUPT5HO00267 1087 aaKnown RBP8.99□□□□□ -0.97
ECHDC1-222ENST00000531967 PAXIP1Q6ZW49 1069 aaPredicted RBP8.99□□□□□ -0.97
ECHDC1-222ENST00000531967 ATXN8OSP0DMR3 200 aa8.97□□□□□ -0.97
ECHDC1-222ENST00000531967 FOXD1Q16676 465 aa8.97□□□□□ -0.97
ECHDC1-222ENST00000531967 BBXQ8WY36 941 aaPredicted RBP8.96□□□□□ -0.97
ECHDC1-222ENST00000531967 TRIM26Q12899 539 aaPredicted RBP8.96□□□□□ -0.98
ECHDC1-222ENST00000531967 CFAP44Q96MT7 982 aa8.95□□□□□ -0.98
ECHDC1-222ENST00000531967 TSHZ2Q9NRE2 1034 aa8.91□□□□□ -0.98
ECHDC1-222ENST00000531967 PKD2Q13563 968 aa8.9□□□□□ -0.99
ECHDC1-222ENST00000531967 UBTFP17480 764 aaKnown RBP8.88□□□□□ -0.99
ECHDC1-222ENST00000531967 HRCP23327 699 aa8.84□□□□□ -0.99
ECHDC1-222ENST00000531967 NPM1P06748 294 aaKnown RBP eCLIP8.84□□□□□ -0.99
ECHDC1-222ENST00000531967 POTEDQ86YR6 584 aa8.79□□□□□ -1
ECHDC1-222ENST00000531967 DNAJC5Q9H3Z4 198 aa8.79□□□□□ -1
ECHDC1-222ENST00000531967 SPRYD3Q8NCJ5 442 aa8.79□□□□□ -1
ECHDC1-222ENST00000531967 VASPP50552 380 aaPredicted RBP8.76□□□□□ -1.01
ECHDC1-222ENST00000531967 IFNLR1Q8IU57 520 aaPredicted RBP8.76□□□□□ -1.01
ECHDC1-222ENST00000531967 EIF5BO60841 1220 aaKnown RBP8.74□□□□□ -1.01
ECHDC1-222ENST00000531967 MYCNP04198 464 aaPredicted RBP8.73□□□□□ -1.01
ECHDC1-222ENST00000531967 SLC4A2P04920 1241 aa8.73□□□□□ -1.01
ECHDC1-222ENST00000531967 PIAS4Q8N2W9 510 aaPredicted RBP8.72□□□□□ -1.01
ECHDC1-222ENST00000531967 SCAF1Q9H7N4 1312 aaKnown RBP8.67□□□□□ -1.02
ECHDC1-222ENST00000531967 LOC105371045A0A1W2PR82 267 aa8.63□□□□□ -1.03
ECHDC1-222ENST00000531967 ECM2O94769 699 aaPredicted RBP8.61□□□□□ -1.03
ECHDC1-222ENST00000531967 CCDC9Q9Y3X0 531 aaKnown RBP8.61□□□□□ -1.03
ECHDC1-222ENST00000531967 BRPF1P55201 1214 aaPredicted RBP8.6□□□□□ -1.03
ECHDC1-222ENST00000531967 RNF216Q9NWF9 866 aaPredicted RBP8.58□□□□□ -1.04
ECHDC1-222ENST00000531967 RGL2O15211 777 aa8.52□□□□□ -1.05
ECHDC1-222ENST00000531967 ZBTB7CA1YPR0 619 aa8.51□□□□□ -1.05
ECHDC1-222ENST00000531967 PROM2Q8N271 834 aa8.5□□□□□ -1.05
ECHDC1-222ENST00000531967 TRHP20396 242 aaPredicted RBP8.5□□□□□ -1.05
ECHDC1-222ENST00000531967 ATF5Q9Y2D1 282 aaPredicted RBP8.5□□□□□ -1.05
ECHDC1-222ENST00000531967 SPDYE4A6NLX3 237 aa8.48□□□□□ -1.05
ECHDC1-222ENST00000531967 ZMYND15Q9H091 742 aa8.48□□□□□ -1.05
ECHDC1-222ENST00000531967 RSPH6AQ9H0K4 717 aa8.48□□□□□ -1.05
ECHDC1-222ENST00000531967 ARID3AQ99856 593 aa8.48□□□□□ -1.05
ECHDC1-222ENST00000531967 SHROOM4Q9ULL8 1493 aa8.47□□□□□ -1.05
ECHDC1-222ENST00000531967 CHGAP10645 457 aaKnown RBP8.47□□□□□ -1.05
ECHDC1-222ENST00000531967 NEUROD2Q15784 382 aa8.43□□□□□ -1.06
ECHDC1-222ENST00000531967 SPOCK2Q92563 424 aa8.42□□□□□ -1.06
ECHDC1-222ENST00000531967 IGSF3O75054 1194 aa8.41□□□□□ -1.06
ECHDC1-222ENST00000531967 PDIA4P13667 645 aaKnown RBP8.41□□□□□ -1.06
ECHDC1-222ENST00000531967 NECTIN2Q92692 538 aa8.4□□□□□ -1.06
ECHDC1-222ENST00000531967 LMOD2Q6P5Q4 547 aa8.39□□□□□ -1.07
ECHDC1-222ENST00000531967 C1orf115Q9H7X2 142 aa8.39□□□□□ -1.07
ECHDC1-222ENST00000531967 CDK11BP21127 795 aaKnown RBP8.38□□□□□ -1.07
ECHDC1-222ENST00000531967 MAPK8IP2Q13387 824 aaPredicted RBP8.38□□□□□ -1.07
ECHDC1-222ENST00000531967 CDK11AQ9UQ88 783 aaPredicted RBP8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms