Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC17.69■□□□□ 0.42
CHD9Q3L8U1 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CHD9Q3L8U1 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CHD9Q3L8U1 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC17.69■□□□□ 0.42
CHD9Q3L8U1 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CHD9Q3L8U1 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC17.69■□□□□ 0.42
CHD9Q3L8U1 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
CHD9Q3L8U1 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CHD9Q3L8U1 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
CHD9Q3L8U1 CDC14C-201ENST00000428251 1719 ntBASIC17.69■□□□□ 0.42
CHD9Q3L8U1 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
CHD9Q3L8U1 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC17.69■□□□□ 0.42
CHD9Q3L8U1 FST-202ENST00000396947 2538 ntTSL 5 BASIC17.69■□□□□ 0.42
CHD9Q3L8U1 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CHD9Q3L8U1 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
CHD9Q3L8U1 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CHD9Q3L8U1 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC17.69■□□□□ 0.42
CHD9Q3L8U1 MIR4492-201ENST00000581627 80 ntBASIC17.69■□□□□ 0.42
CHD9Q3L8U1 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
CHD9Q3L8U1 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
CHD9Q3L8U1 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC17.69■□□□□ 0.42
CHD9Q3L8U1 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC17.69■□□□□ 0.42
CHD9Q3L8U1 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CHD9Q3L8U1 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CHD9Q3L8U1 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
CHD9Q3L8U1 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC17.68■□□□□ 0.42
CHD9Q3L8U1 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC17.68■□□□□ 0.42
CHD9Q3L8U1 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
CHD9Q3L8U1 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC17.68■□□□□ 0.42
CHD9Q3L8U1 MIR1908-201ENST00000410394 80 ntBASIC17.68■□□□□ 0.42
CHD9Q3L8U1 AC114501.2-201ENST00000439631 535 ntBASIC17.68■□□□□ 0.42
CHD9Q3L8U1 AL512361.1-201ENST00000554200 418 ntBASIC17.68■□□□□ 0.42
CHD9Q3L8U1 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
CHD9Q3L8U1 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CHD9Q3L8U1 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC17.68■□□□□ 0.42
CHD9Q3L8U1 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC17.68■□□□□ 0.42
CHD9Q3L8U1 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
CHD9Q3L8U1 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CHD9Q3L8U1 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CHD9Q3L8U1 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC17.68■□□□□ 0.42
CHD9Q3L8U1 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC17.68■□□□□ 0.42
CHD9Q3L8U1 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CHD9Q3L8U1 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC17.68■□□□□ 0.42
CHD9Q3L8U1 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CHD9Q3L8U1 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
CHD9Q3L8U1 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
CHD9Q3L8U1 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CHD9Q3L8U1 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC17.68■□□□□ 0.42
CHD9Q3L8U1 RPL28-204ENST00000431533 590 ntTSL 2 BASIC17.68■□□□□ 0.42
CHD9Q3L8U1 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC17.68■□□□□ 0.42
CHD9Q3L8U1 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC17.68■□□□□ 0.42
CHD9Q3L8U1 NME9-203ENST00000383180 2133 ntTSL 2 BASIC17.68■□□□□ 0.42
CHD9Q3L8U1 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC17.67■□□□□ 0.42
CHD9Q3L8U1 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CHD9Q3L8U1 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CHD9Q3L8U1 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
CHD9Q3L8U1 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CHD9Q3L8U1 CDK2AP2P3-201ENST00000422476 372 ntBASIC17.67■□□□□ 0.42
CHD9Q3L8U1 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC17.67■□□□□ 0.42
CHD9Q3L8U1 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC17.67■□□□□ 0.42
CHD9Q3L8U1 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CHD9Q3L8U1 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CHD9Q3L8U1 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC17.67■□□□□ 0.42
CHD9Q3L8U1 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CHD9Q3L8U1 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CHD9Q3L8U1 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
CHD9Q3L8U1 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
CHD9Q3L8U1 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC17.67■□□□□ 0.42
CHD9Q3L8U1 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC17.67■□□□□ 0.42
CHD9Q3L8U1 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC17.67■□□□□ 0.42
CHD9Q3L8U1 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CHD9Q3L8U1 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC17.67■□□□□ 0.42
CHD9Q3L8U1 TUBB1P2-201ENST00000422712 1306 ntBASIC17.67■□□□□ 0.42
CHD9Q3L8U1 TUBB1P1-201ENST00000503144 1300 ntBASIC17.67■□□□□ 0.42
CHD9Q3L8U1 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CHD9Q3L8U1 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CHD9Q3L8U1 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC17.67■□□□□ 0.42
CHD9Q3L8U1 GOLGA2P9-201ENST00000596977 1937 ntBASIC17.67■□□□□ 0.42
CHD9Q3L8U1 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CHD9Q3L8U1 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CHD9Q3L8U1 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CHD9Q3L8U1 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CHD9Q3L8U1 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC17.66■□□□□ 0.42
CHD9Q3L8U1 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CHD9Q3L8U1 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC17.66■□□□□ 0.42
CHD9Q3L8U1 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC17.66■□□□□ 0.42
CHD9Q3L8U1 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CHD9Q3L8U1 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC17.66■□□□□ 0.42
CHD9Q3L8U1 CSF2RBP1-201ENST00000447905 391 ntBASIC17.66■□□□□ 0.42
CHD9Q3L8U1 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC17.66■□□□□ 0.42
CHD9Q3L8U1 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC17.66■□□□□ 0.42
CHD9Q3L8U1 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC17.66■□□□□ 0.42
CHD9Q3L8U1 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC17.66■□□□□ 0.42
CHD9Q3L8U1 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC17.66■□□□□ 0.42
CHD9Q3L8U1 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC17.66■□□□□ 0.42
CHD9Q3L8U1 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CHD9Q3L8U1 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC17.66■□□□□ 0.42
CHD9Q3L8U1 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
CHD9Q3L8U1 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CHD9Q3L8U1 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms