Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CDX1P47902 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CDX1P47902 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CDX1P47902 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CDX1P47902 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CDX1P47902 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CDX1P47902 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
CDX1P47902 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
CDX1P47902 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CDX1P47902 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CDX1P47902 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CDX1P47902 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CDX1P47902 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC13.93□□□□□ -0.18
CDX1P47902 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CDX1P47902 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
CDX1P47902 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
CDX1P47902 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CDX1P47902 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
CDX1P47902 NME9-203ENST00000383180 2133 ntTSL 2 BASIC13.93□□□□□ -0.18
CDX1P47902 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
CDX1P47902 AC006116.8-202ENST00000587620 1550 ntBASIC13.93□□□□□ -0.18
CDX1P47902 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CDX1P47902 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
CDX1P47902 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CDX1P47902 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CDX1P47902 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CDX1P47902 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CDX1P47902 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CDX1P47902 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC13.93□□□□□ -0.18
CDX1P47902 BET1L-206ENST00000486280 665 ntTSL 3 BASIC13.93□□□□□ -0.18
CDX1P47902 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CDX1P47902 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
CDX1P47902 AC138894.3-201ENST00000603787 634 ntBASIC13.93□□□□□ -0.18
CDX1P47902 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
CDX1P47902 IRF5-214ENST00000613821 595 ntTSL 5 BASIC13.93□□□□□ -0.18
CDX1P47902 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CDX1P47902 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC13.93□□□□□ -0.18
CDX1P47902 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC13.93□□□□□ -0.18
CDX1P47902 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
CDX1P47902 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CDX1P47902 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CDX1P47902 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CDX1P47902 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
CDX1P47902 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC13.93□□□□□ -0.18
CDX1P47902 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
CDX1P47902 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CDX1P47902 STK24-203ENST00000397517 4578 ntTSL 2 BASIC13.93□□□□□ -0.18
CDX1P47902 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CDX1P47902 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CDX1P47902 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
CDX1P47902 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
CDX1P47902 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDX1P47902 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
CDX1P47902 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC13.92□□□□□ -0.18
CDX1P47902 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDX1P47902 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDX1P47902 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDX1P47902 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC13.92□□□□□ -0.18
CDX1P47902 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDX1P47902 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CDX1P47902 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CDX1P47902 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDX1P47902 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC13.92□□□□□ -0.18
CDX1P47902 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC13.92□□□□□ -0.18
CDX1P47902 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDX1P47902 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC13.92□□□□□ -0.18
CDX1P47902 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDX1P47902 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
CDX1P47902 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC13.92□□□□□ -0.18
CDX1P47902 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC13.92□□□□□ -0.18
CDX1P47902 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC13.92□□□□□ -0.18
CDX1P47902 AC091607.1-201ENST00000490318 1060 ntBASIC13.92□□□□□ -0.18
CDX1P47902 AC112698.1-201ENST00000510299 916 ntBASIC13.92□□□□□ -0.18
CDX1P47902 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC13.92□□□□□ -0.18
CDX1P47902 AC009533.2-201ENST00000543664 586 ntBASIC13.92□□□□□ -0.18
CDX1P47902 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC13.92□□□□□ -0.18
CDX1P47902 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC13.92□□□□□ -0.18
CDX1P47902 RN7SL510P-201ENST00000581311 263 ntBASIC13.92□□□□□ -0.18
CDX1P47902 IFNL4P1-201ENST00000607083 540 ntBASIC13.92□□□□□ -0.18
CDX1P47902 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC13.92□□□□□ -0.18
CDX1P47902 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CDX1P47902 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDX1P47902 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
CDX1P47902 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CDX1P47902 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDX1P47902 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
CDX1P47902 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDX1P47902 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDX1P47902 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC13.92□□□□□ -0.18
CDX1P47902 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CDX1P47902 AC022898.2-201ENST00000616822 1312 ntBASIC13.91□□□□□ -0.18
CDX1P47902 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
CDX1P47902 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC13.91□□□□□ -0.18
CDX1P47902 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CDX1P47902 PHGDH-209ENST00000641074 1780 ntBASIC13.91□□□□□ -0.18
CDX1P47902 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
CDX1P47902 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CDX1P47902 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC13.91□□□□□ -0.18
CDX1P47902 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC13.91□□□□□ -0.18
CDX1P47902 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms