Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC010491.1-201ENST00000563101 2797 ntBASIC16.26■□□□□ 0.19
MSX2P35548 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
MSX2P35548 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC16.26■□□□□ 0.19
MSX2P35548 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC16.26■□□□□ 0.19
MSX2P35548 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
MSX2P35548 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
MSX2P35548 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC16.26■□□□□ 0.19
MSX2P35548 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSX2P35548 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
MSX2P35548 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
MSX2P35548 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
MSX2P35548 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC16.25■□□□□ 0.19
MSX2P35548 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC16.25■□□□□ 0.19
MSX2P35548 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC16.25■□□□□ 0.19
MSX2P35548 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
MSX2P35548 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.25■□□□□ 0.19
MSX2P35548 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
MSX2P35548 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
MSX2P35548 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC16.25■□□□□ 0.19
MSX2P35548 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
MSX2P35548 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC16.25■□□□□ 0.19
MSX2P35548 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
MSX2P35548 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
MSX2P35548 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC16.25■□□□□ 0.19
MSX2P35548 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
MSX2P35548 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC16.25■□□□□ 0.19
MSX2P35548 IGHGP-201ENST00000390555 1178 ntBASIC16.25■□□□□ 0.19
MSX2P35548 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC16.25■□□□□ 0.19
MSX2P35548 AL023973.1-201ENST00000624619 620 ntBASIC16.25■□□□□ 0.19
MSX2P35548 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
MSX2P35548 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
MSX2P35548 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
MSX2P35548 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
MSX2P35548 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
MSX2P35548 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
MSX2P35548 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
MSX2P35548 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
MSX2P35548 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
MSX2P35548 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.25■□□□□ 0.19
MSX2P35548 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC16.25■□□□□ 0.19
MSX2P35548 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
MSX2P35548 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MSX2P35548 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
MSX2P35548 AC097374.2-201ENST00000618617 1306 ntBASIC16.24■□□□□ 0.19
MSX2P35548 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
MSX2P35548 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
MSX2P35548 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MSX2P35548 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
MSX2P35548 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
MSX2P35548 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MSX2P35548 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MSX2P35548 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
MSX2P35548 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
MSX2P35548 AP000523.1-201ENST00000398242 1049 ntBASIC16.24■□□□□ 0.19
MSX2P35548 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC16.24■□□□□ 0.19
MSX2P35548 NAPSB-206ENST00000562112 1266 ntBASIC16.24■□□□□ 0.19
MSX2P35548 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC16.24■□□□□ 0.19
MSX2P35548 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
MSX2P35548 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC16.24■□□□□ 0.19
MSX2P35548 LITAF-220ENST00000620789 692 ntTSL 5 BASIC16.24■□□□□ 0.19
MSX2P35548 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC16.24■□□□□ 0.19
MSX2P35548 AC066615.1-201ENST00000640911 628 ntBASIC16.24■□□□□ 0.19
MSX2P35548 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
MSX2P35548 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC16.24■□□□□ 0.19
MSX2P35548 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
MSX2P35548 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC16.24■□□□□ 0.19
MSX2P35548 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
MSX2P35548 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MSX2P35548 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC16.24■□□□□ 0.19
MSX2P35548 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
MSX2P35548 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
MSX2P35548 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MSX2P35548 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC16.24■□□□□ 0.19
MSX2P35548 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC16.24■□□□□ 0.19
MSX2P35548 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MSX2P35548 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
MSX2P35548 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
MSX2P35548 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
MSX2P35548 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MSX2P35548 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
MSX2P35548 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.23■□□□□ 0.19
MSX2P35548 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
MSX2P35548 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
MSX2P35548 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC16.23■□□□□ 0.19
MSX2P35548 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
MSX2P35548 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
MSX2P35548 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
MSX2P35548 AMT-206ENST00000458307 1860 ntTSL 2 BASIC16.23■□□□□ 0.19
MSX2P35548 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
MSX2P35548 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC16.23■□□□□ 0.19
MSX2P35548 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC16.23■□□□□ 0.19
MSX2P35548 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
MSX2P35548 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
MSX2P35548 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC16.23■□□□□ 0.19
MSX2P35548 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
MSX2P35548 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
MSX2P35548 DDT-203ENST00000403754 569 ntTSL 3 BASIC16.23■□□□□ 0.19
MSX2P35548 DDT-206ENST00000430101 573 ntTSL 2 BASIC16.23■□□□□ 0.19
MSX2P35548 SAPCD2P2-201ENST00000431719 1174 ntBASIC16.23■□□□□ 0.19
MSX2P35548 AC007967.3-201ENST00000434308 558 ntBASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms