Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC17.33■□□□□ 0.36
COL9A1P20849 PXK-206ENST00000463280 2825 ntTSL 2 BASIC17.33■□□□□ 0.36
COL9A1P20849 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
COL9A1P20849 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.32■□□□□ 0.36
COL9A1P20849 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL9A1P20849 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL9A1P20849 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL9A1P20849 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC17.32■□□□□ 0.36
COL9A1P20849 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL9A1P20849 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL9A1P20849 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL9A1P20849 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC17.32■□□□□ 0.36
COL9A1P20849 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC17.32■□□□□ 0.36
COL9A1P20849 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC17.32■□□□□ 0.36
COL9A1P20849 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC17.32■□□□□ 0.36
COL9A1P20849 EMC4-209ENST00000559421 497 ntTSL 2 BASIC17.32■□□□□ 0.36
COL9A1P20849 MIR4706-201ENST00000582134 82 ntBASIC17.32■□□□□ 0.36
COL9A1P20849 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC17.32■□□□□ 0.36
COL9A1P20849 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC17.32■□□□□ 0.36
COL9A1P20849 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL9A1P20849 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL9A1P20849 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL9A1P20849 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL9A1P20849 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL9A1P20849 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC17.32■□□□□ 0.36
COL9A1P20849 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
COL9A1P20849 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL9A1P20849 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
COL9A1P20849 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
COL9A1P20849 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
COL9A1P20849 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.31■□□□□ 0.36
COL9A1P20849 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL9A1P20849 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
COL9A1P20849 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC17.31■□□□□ 0.36
COL9A1P20849 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL9A1P20849 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL9A1P20849 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC17.31■□□□□ 0.36
COL9A1P20849 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL9A1P20849 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC17.31■□□□□ 0.36
COL9A1P20849 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL9A1P20849 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
COL9A1P20849 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL9A1P20849 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL9A1P20849 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL9A1P20849 STX1A-203ENST00000395155 783 ntTSL 2 BASIC17.31■□□□□ 0.36
COL9A1P20849 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC17.31■□□□□ 0.36
COL9A1P20849 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC17.31■□□□□ 0.36
COL9A1P20849 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC17.31■□□□□ 0.36
COL9A1P20849 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
COL9A1P20849 AC009407.1-201ENST00000568958 598 ntBASIC17.31■□□□□ 0.36
COL9A1P20849 MIR5572-201ENST00000583188 137 ntBASIC17.31■□□□□ 0.36
COL9A1P20849 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC17.31■□□□□ 0.36
COL9A1P20849 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.31■□□□□ 0.36
COL9A1P20849 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL9A1P20849 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL9A1P20849 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL9A1P20849 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
COL9A1P20849 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC17.31■□□□□ 0.36
COL9A1P20849 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL9A1P20849 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL9A1P20849 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
COL9A1P20849 ABALON-201ENST00000629058 1903 ntBASIC17.31■□□□□ 0.36
COL9A1P20849 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL9A1P20849 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
COL9A1P20849 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17.3■□□□□ 0.36
COL9A1P20849 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC17.3■□□□□ 0.36
COL9A1P20849 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL9A1P20849 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL9A1P20849 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL9A1P20849 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL9A1P20849 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL9A1P20849 GRAMD4P3-201ENST00000621665 1669 ntBASIC17.3■□□□□ 0.36
COL9A1P20849 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL9A1P20849 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC17.3■□□□□ 0.36
COL9A1P20849 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
COL9A1P20849 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC17.3■□□□□ 0.36
COL9A1P20849 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC17.3■□□□□ 0.36
COL9A1P20849 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC17.3■□□□□ 0.36
COL9A1P20849 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL9A1P20849 CD81-202ENST00000381036 880 ntTSL 3 BASIC17.3■□□□□ 0.36
COL9A1P20849 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC17.3■□□□□ 0.36
COL9A1P20849 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC17.3■□□□□ 0.36
COL9A1P20849 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC17.3■□□□□ 0.36
COL9A1P20849 PFN1P12-201ENST00000455938 534 ntBASIC17.3■□□□□ 0.36
COL9A1P20849 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
COL9A1P20849 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC17.3■□□□□ 0.36
COL9A1P20849 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC17.3■□□□□ 0.36
COL9A1P20849 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC17.3■□□□□ 0.36
COL9A1P20849 AP001889.1-201ENST00000525414 633 ntBASIC17.3■□□□□ 0.36
COL9A1P20849 NEU3-203ENST00000529024 581 ntTSL 3 BASIC17.3■□□□□ 0.36
COL9A1P20849 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC17.3■□□□□ 0.36
COL9A1P20849 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC17.3■□□□□ 0.36
COL9A1P20849 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL9A1P20849 HCG18-245ENST00000602550 559 ntTSL 4 BASIC17.3■□□□□ 0.36
COL9A1P20849 LINC01451-201ENST00000623792 534 ntBASIC17.3■□□□□ 0.36
COL9A1P20849 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL9A1P20849 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL9A1P20849 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC17.3■□□□□ 0.36
COL9A1P20849 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL9A1P20849 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms