Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
TNFP01375 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
TNFP01375 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
TNFP01375 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
TNFP01375 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
TNFP01375 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.52■□□□□ 0.23
TNFP01375 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
TNFP01375 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC16.52■□□□□ 0.23
TNFP01375 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.23
TNFP01375 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
TNFP01375 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.51■□□□□ 0.23
TNFP01375 HARS-204ENST00000438307 1789 ntTSL 2 BASIC16.51■□□□□ 0.23
TNFP01375 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
TNFP01375 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TNFP01375 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC16.51■□□□□ 0.23
TNFP01375 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TNFP01375 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TNFP01375 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
TNFP01375 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TNFP01375 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TNFP01375 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
TNFP01375 PMS2P4-201ENST00000412466 1052 ntBASIC16.51■□□□□ 0.23
TNFP01375 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.51■□□□□ 0.23
TNFP01375 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC16.51■□□□□ 0.23
TNFP01375 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TNFP01375 AC079140.1-201ENST00000508039 487 ntBASIC16.51■□□□□ 0.23
TNFP01375 RFPL4AP1-201ENST00000530883 850 ntBASIC16.51■□□□□ 0.23
TNFP01375 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
TNFP01375 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TNFP01375 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TNFP01375 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
TNFP01375 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
TNFP01375 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
TNFP01375 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TNFP01375 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TNFP01375 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TNFP01375 AC067852.2-201ENST00000590513 2313 ntBASIC16.51■□□□□ 0.23
TNFP01375 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC16.51■□□□□ 0.23
TNFP01375 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.51■□□□□ 0.23
TNFP01375 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TNFP01375 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC16.51■□□□□ 0.23
TNFP01375 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TNFP01375 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
TNFP01375 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TNFP01375 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
TNFP01375 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
TNFP01375 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TNFP01375 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC16.5■□□□□ 0.23
TNFP01375 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
TNFP01375 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TNFP01375 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
TNFP01375 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TNFP01375 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TNFP01375 AL139400.1-201ENST00000366220 510 ntBASIC16.5■□□□□ 0.23
TNFP01375 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC16.5■□□□□ 0.23
TNFP01375 RNU1-129P-201ENST00000384064 167 ntBASIC16.5■□□□□ 0.23
TNFP01375 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC16.5■□□□□ 0.23
TNFP01375 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC16.5■□□□□ 0.23
TNFP01375 STARD13-205ENST00000439831 945 ntTSL 2 BASIC16.5■□□□□ 0.23
TNFP01375 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TNFP01375 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC16.5■□□□□ 0.23
TNFP01375 HLA-J-203ENST00000494367 1087 ntBASIC16.5■□□□□ 0.23
TNFP01375 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC16.5■□□□□ 0.23
TNFP01375 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
TNFP01375 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC16.5■□□□□ 0.23
TNFP01375 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TNFP01375 AC243562.1-201ENST00000560672 389 ntBASIC16.5■□□□□ 0.23
TNFP01375 AC025678.2-201ENST00000562061 970 ntBASIC16.5■□□□□ 0.23
TNFP01375 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC16.5■□□□□ 0.23
TNFP01375 U1.21-201ENST00000580816 167 ntBASIC16.5■□□□□ 0.23
TNFP01375 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TNFP01375 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
TNFP01375 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TNFP01375 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
TNFP01375 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC16.5■□□□□ 0.23
TNFP01375 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
TNFP01375 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TNFP01375 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TNFP01375 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
TNFP01375 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
TNFP01375 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
TNFP01375 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TNFP01375 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TNFP01375 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC16.5■□□□□ 0.23
TNFP01375 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
TNFP01375 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
TNFP01375 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TNFP01375 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TNFP01375 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TNFP01375 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC16.49■□□□□ 0.23
TNFP01375 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
TNFP01375 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TNFP01375 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TNFP01375 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
TNFP01375 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TNFP01375 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TNFP01375 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
TNFP01375 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TNFP01375 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
TNFP01375 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 57.2 ms