Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLDN3O15551 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC18.54■□□□□ 0.56
CLDN3O15551 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLDN3O15551 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLDN3O15551 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CLDN3O15551 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLDN3O15551 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLDN3O15551 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC18.54■□□□□ 0.56
CLDN3O15551 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC18.54■□□□□ 0.56
CLDN3O15551 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CLDN3O15551 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC18.54■□□□□ 0.56
CLDN3O15551 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CLDN3O15551 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC18.54■□□□□ 0.56
CLDN3O15551 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC18.54■□□□□ 0.56
CLDN3O15551 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
CLDN3O15551 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLDN3O15551 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
CLDN3O15551 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLDN3O15551 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CLDN3O15551 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLDN3O15551 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC18.53■□□□□ 0.56
CLDN3O15551 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CLDN3O15551 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CLDN3O15551 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CLDN3O15551 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC18.53■□□□□ 0.56
CLDN3O15551 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC18.53■□□□□ 0.56
CLDN3O15551 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC18.53■□□□□ 0.56
CLDN3O15551 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC18.53■□□□□ 0.56
CLDN3O15551 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC18.53■□□□□ 0.56
CLDN3O15551 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC18.53■□□□□ 0.56
CLDN3O15551 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC18.53■□□□□ 0.56
CLDN3O15551 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
CLDN3O15551 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC18.53■□□□□ 0.56
CLDN3O15551 ACTL9-202ENST00000612068 1252 ntBASIC18.53■□□□□ 0.56
CLDN3O15551 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC18.53■□□□□ 0.56
CLDN3O15551 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC18.53■□□□□ 0.56
CLDN3O15551 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CLDN3O15551 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLDN3O15551 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
CLDN3O15551 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLDN3O15551 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
CLDN3O15551 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC18.53■□□□□ 0.56
CLDN3O15551 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLDN3O15551 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CLDN3O15551 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLDN3O15551 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CLDN3O15551 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC18.52■□□□□ 0.56
CLDN3O15551 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
CLDN3O15551 PC-214ENST00000628663 1470 ntTSL 5 BASIC18.52■□□□□ 0.56
CLDN3O15551 AC092068.3-201ENST00000587894 2016 ntBASIC18.52■□□□□ 0.56
CLDN3O15551 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CLDN3O15551 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CLDN3O15551 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CLDN3O15551 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC18.52■□□□□ 0.56
CLDN3O15551 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
CLDN3O15551 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CLDN3O15551 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC18.52■□□□□ 0.56
CLDN3O15551 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC18.52■□□□□ 0.56
CLDN3O15551 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC18.52■□□□□ 0.56
CLDN3O15551 DUX4L17-201ENST00000557360 1267 ntBASIC18.52■□□□□ 0.56
CLDN3O15551 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC18.52■□□□□ 0.56
CLDN3O15551 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC18.52■□□□□ 0.56
CLDN3O15551 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
CLDN3O15551 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CLDN3O15551 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC18.52■□□□□ 0.56
CLDN3O15551 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC18.52■□□□□ 0.56
CLDN3O15551 AQP6-205ENST00000618286 829 ntTSL 5 BASIC18.52■□□□□ 0.56
CLDN3O15551 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CLDN3O15551 AC007064.4-201ENST00000637740 555 ntBASIC18.52■□□□□ 0.56
CLDN3O15551 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CLDN3O15551 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
CLDN3O15551 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC18.52■□□□□ 0.56
CLDN3O15551 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CLDN3O15551 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CLDN3O15551 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CLDN3O15551 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC18.52■□□□□ 0.55
CLDN3O15551 TOP3BP1-201ENST00000420768 1380 ntBASIC18.52■□□□□ 0.55
CLDN3O15551 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
CLDN3O15551 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CLDN3O15551 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
CLDN3O15551 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC18.52■□□□□ 0.55
CLDN3O15551 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLDN3O15551 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CLDN3O15551 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC18.51■□□□□ 0.55
CLDN3O15551 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
CLDN3O15551 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC18.51■□□□□ 0.55
CLDN3O15551 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLDN3O15551 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
CLDN3O15551 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
CLDN3O15551 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLDN3O15551 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLDN3O15551 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC18.51■□□□□ 0.55
CLDN3O15551 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC18.51■□□□□ 0.55
CLDN3O15551 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC18.51■□□□□ 0.55
CLDN3O15551 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLDN3O15551 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CLDN3O15551 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLDN3O15551 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CLDN3O15551 AC023274.1-201ENST00000418278 595 ntBASIC18.51■□□□□ 0.55
CLDN3O15551 AL513480.1-201ENST00000451731 511 ntBASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms