Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC13.78□□□□□ -0.2
FOXA2Q9Y261 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
FOXA2Q9Y261 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC13.78□□□□□ -0.2
FOXA2Q9Y261 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC13.78□□□□□ -0.2
FOXA2Q9Y261 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA2Q9Y261 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA2Q9Y261 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA2Q9Y261 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA2Q9Y261 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA2Q9Y261 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA2Q9Y261 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
FOXA2Q9Y261 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC13.77□□□□□ -0.2
FOXA2Q9Y261 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
FOXA2Q9Y261 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
FOXA2Q9Y261 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.2
FOXA2Q9Y261 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC13.77□□□□□ -0.2
FOXA2Q9Y261 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC13.77□□□□□ -0.2
FOXA2Q9Y261 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
FOXA2Q9Y261 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
FOXA2Q9Y261 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA2Q9Y261 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA2Q9Y261 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
FOXA2Q9Y261 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA2Q9Y261 SOD2-201ENST00000337404 991 ntTSL 2 BASIC13.77□□□□□ -0.21
FOXA2Q9Y261 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA2Q9Y261 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA2Q9Y261 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA2Q9Y261 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC13.77□□□□□ -0.21
FOXA2Q9Y261 AL450487.1-201ENST00000426799 995 ntBASIC13.77□□□□□ -0.21
FOXA2Q9Y261 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA2Q9Y261 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC13.77□□□□□ -0.21
FOXA2Q9Y261 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC13.77□□□□□ -0.21
FOXA2Q9Y261 AC132008.2-207ENST00000454517 770 ntBASIC13.77□□□□□ -0.21
FOXA2Q9Y261 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
FOXA2Q9Y261 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC13.77□□□□□ -0.21
FOXA2Q9Y261 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA2Q9Y261 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA2Q9Y261 IFNL4P1-201ENST00000607083 540 ntBASIC13.77□□□□□ -0.21
FOXA2Q9Y261 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC13.77□□□□□ -0.21
FOXA2Q9Y261 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC13.77□□□□□ -0.21
FOXA2Q9Y261 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC13.77□□□□□ -0.21
FOXA2Q9Y261 OVCH1-AS1-204ENST00000641955 5529 ntBASIC13.77□□□□□ -0.21
FOXA2Q9Y261 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA2Q9Y261 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
FOXA2Q9Y261 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA2Q9Y261 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
FOXA2Q9Y261 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA2Q9Y261 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA2Q9Y261 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA2Q9Y261 DOC2GP-204ENST00000639052 2548 ntBASIC13.77□□□□□ -0.21
FOXA2Q9Y261 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA2Q9Y261 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA2Q9Y261 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC13.76□□□□□ -0.21
FOXA2Q9Y261 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC13.76□□□□□ -0.21
FOXA2Q9Y261 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA2Q9Y261 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC13.76□□□□□ -0.21
FOXA2Q9Y261 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA2Q9Y261 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC13.76□□□□□ -0.21
FOXA2Q9Y261 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA2Q9Y261 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA2Q9Y261 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
FOXA2Q9Y261 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC13.76□□□□□ -0.21
FOXA2Q9Y261 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
FOXA2Q9Y261 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA2Q9Y261 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC13.76□□□□□ -0.21
FOXA2Q9Y261 MED16-201ENST00000269814 1199 ntTSL 5 BASIC13.76□□□□□ -0.21
FOXA2Q9Y261 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA2Q9Y261 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA2Q9Y261 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC13.76□□□□□ -0.21
FOXA2Q9Y261 RBM17P3-201ENST00000417687 1192 ntBASIC13.76□□□□□ -0.21
FOXA2Q9Y261 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC13.76□□□□□ -0.21
FOXA2Q9Y261 RBSN-204ENST00000449050 903 ntTSL 2 BASIC13.76□□□□□ -0.21
FOXA2Q9Y261 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC13.76□□□□□ -0.21
FOXA2Q9Y261 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC13.76□□□□□ -0.21
FOXA2Q9Y261 TOLLIP-AS1-201ENST00000530897 939 ntBASIC13.76□□□□□ -0.21
FOXA2Q9Y261 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC13.76□□□□□ -0.21
FOXA2Q9Y261 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC13.76□□□□□ -0.21
FOXA2Q9Y261 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC13.76□□□□□ -0.21
FOXA2Q9Y261 TBCB-205ENST00000585746 875 ntTSL 3 BASIC13.76□□□□□ -0.21
FOXA2Q9Y261 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC13.76□□□□□ -0.21
FOXA2Q9Y261 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA2Q9Y261 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC13.76□□□□□ -0.21
FOXA2Q9Y261 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
FOXA2Q9Y261 AC073592.5-201ENST00000624854 528 ntBASIC13.76□□□□□ -0.21
FOXA2Q9Y261 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA2Q9Y261 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA2Q9Y261 AC018695.7-201ENST00000624587 2492 ntBASIC13.76□□□□□ -0.21
FOXA2Q9Y261 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA2Q9Y261 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
FOXA2Q9Y261 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA2Q9Y261 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA2Q9Y261 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA2Q9Y261 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA2Q9Y261 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA2Q9Y261 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
FOXA2Q9Y261 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA2Q9Y261 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC13.76□□□□□ -0.21
FOXA2Q9Y261 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA2Q9Y261 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA2Q9Y261 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms