Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
TDP1Q9NUW8 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
TDP1Q9NUW8 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC17.41■□□□□ 0.38
TDP1Q9NUW8 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TDP1Q9NUW8 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TDP1Q9NUW8 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TDP1Q9NUW8 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TDP1Q9NUW8 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
TDP1Q9NUW8 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC17.41■□□□□ 0.38
TDP1Q9NUW8 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC17.41■□□□□ 0.38
TDP1Q9NUW8 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC17.41■□□□□ 0.38
TDP1Q9NUW8 AC069262.1-201ENST00000539058 672 ntBASIC17.41■□□□□ 0.38
TDP1Q9NUW8 DUX4L27-201ENST00000554796 1261 ntBASIC17.41■□□□□ 0.38
TDP1Q9NUW8 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC17.41■□□□□ 0.38
TDP1Q9NUW8 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TDP1Q9NUW8 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TDP1Q9NUW8 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TDP1Q9NUW8 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
TDP1Q9NUW8 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TDP1Q9NUW8 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TDP1Q9NUW8 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
TDP1Q9NUW8 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TDP1Q9NUW8 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
TDP1Q9NUW8 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
TDP1Q9NUW8 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TDP1Q9NUW8 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
TDP1Q9NUW8 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TDP1Q9NUW8 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
TDP1Q9NUW8 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
TDP1Q9NUW8 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
TDP1Q9NUW8 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC17.4■□□□□ 0.38
TDP1Q9NUW8 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TDP1Q9NUW8 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TDP1Q9NUW8 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TDP1Q9NUW8 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TDP1Q9NUW8 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
TDP1Q9NUW8 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
TDP1Q9NUW8 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TDP1Q9NUW8 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
TDP1Q9NUW8 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
TDP1Q9NUW8 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC17.4■□□□□ 0.38
TDP1Q9NUW8 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC17.4■□□□□ 0.38
TDP1Q9NUW8 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC17.4■□□□□ 0.38
TDP1Q9NUW8 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC17.4■□□□□ 0.38
TDP1Q9NUW8 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TDP1Q9NUW8 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC17.4■□□□□ 0.38
TDP1Q9NUW8 AC051619.7-201ENST00000568314 623 ntBASIC17.4■□□□□ 0.38
TDP1Q9NUW8 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TDP1Q9NUW8 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TDP1Q9NUW8 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TDP1Q9NUW8 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC17.4■□□□□ 0.38
TDP1Q9NUW8 AC008267.7-201ENST00000624570 1194 ntBASIC17.4■□□□□ 0.38
TDP1Q9NUW8 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TDP1Q9NUW8 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
TDP1Q9NUW8 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TDP1Q9NUW8 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.4■□□□□ 0.38
TDP1Q9NUW8 TUBB3P1-201ENST00000405796 1332 ntBASIC17.4■□□□□ 0.38
TDP1Q9NUW8 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TDP1Q9NUW8 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
TDP1Q9NUW8 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TDP1Q9NUW8 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
TDP1Q9NUW8 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
TDP1Q9NUW8 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC17.4■□□□□ 0.38
TDP1Q9NUW8 STX3-203ENST00000529177 1571 ntTSL 2 BASIC17.4■□□□□ 0.38
TDP1Q9NUW8 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TDP1Q9NUW8 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
TDP1Q9NUW8 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC17.4■□□□□ 0.38
TDP1Q9NUW8 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TDP1Q9NUW8 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
TDP1Q9NUW8 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC17.39■□□□□ 0.38
TDP1Q9NUW8 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
TDP1Q9NUW8 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC17.39■□□□□ 0.38
TDP1Q9NUW8 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
TDP1Q9NUW8 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TDP1Q9NUW8 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC17.39■□□□□ 0.37
TDP1Q9NUW8 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC17.39■□□□□ 0.37
TDP1Q9NUW8 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC17.39■□□□□ 0.37
TDP1Q9NUW8 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
TDP1Q9NUW8 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TDP1Q9NUW8 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
TDP1Q9NUW8 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC17.39■□□□□ 0.37
TDP1Q9NUW8 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TDP1Q9NUW8 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC17.39■□□□□ 0.37
TDP1Q9NUW8 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TDP1Q9NUW8 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC17.39■□□□□ 0.37
TDP1Q9NUW8 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC17.39■□□□□ 0.37
TDP1Q9NUW8 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC17.39■□□□□ 0.37
TDP1Q9NUW8 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
TDP1Q9NUW8 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
TDP1Q9NUW8 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC17.39■□□□□ 0.37
TDP1Q9NUW8 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TDP1Q9NUW8 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TDP1Q9NUW8 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TDP1Q9NUW8 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
TDP1Q9NUW8 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC17.39■□□□□ 0.37
TDP1Q9NUW8 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
TDP1Q9NUW8 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TDP1Q9NUW8 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TDP1Q9NUW8 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
TDP1Q9NUW8 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms