Protein–RNA interactions for Protein: Q9BZS1

FOXP3, Forkhead box protein P3, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXP3Q9BZS1 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
FOXP3Q9BZS1 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
FOXP3Q9BZS1 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
FOXP3Q9BZS1 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
FOXP3Q9BZS1 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC17.57■□□□□ 0.4
FOXP3Q9BZS1 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
FOXP3Q9BZS1 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
FOXP3Q9BZS1 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
FOXP3Q9BZS1 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
FOXP3Q9BZS1 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC17.57■□□□□ 0.4
FOXP3Q9BZS1 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC17.57■□□□□ 0.4
FOXP3Q9BZS1 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC17.57■□□□□ 0.4
FOXP3Q9BZS1 AL662844.1-201ENST00000546340 181 ntBASIC17.57■□□□□ 0.4
FOXP3Q9BZS1 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC17.57■□□□□ 0.4
FOXP3Q9BZS1 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC17.57■□□□□ 0.4
FOXP3Q9BZS1 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC17.57■□□□□ 0.4
FOXP3Q9BZS1 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
FOXP3Q9BZS1 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC17.57■□□□□ 0.4
FOXP3Q9BZS1 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
FOXP3Q9BZS1 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
FOXP3Q9BZS1 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC17.57■□□□□ 0.4
FOXP3Q9BZS1 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
FOXP3Q9BZS1 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
FOXP3Q9BZS1 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC17.57■□□□□ 0.4
FOXP3Q9BZS1 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
FOXP3Q9BZS1 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
FOXP3Q9BZS1 AC022188.1-201ENST00000620960 1664 ntBASIC17.57■□□□□ 0.4
FOXP3Q9BZS1 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
FOXP3Q9BZS1 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
FOXP3Q9BZS1 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
FOXP3Q9BZS1 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
FOXP3Q9BZS1 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
FOXP3Q9BZS1 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
FOXP3Q9BZS1 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
FOXP3Q9BZS1 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
FOXP3Q9BZS1 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
FOXP3Q9BZS1 AC009336.1-201ENST00000608941 1553 ntBASIC17.57■□□□□ 0.4
FOXP3Q9BZS1 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
FOXP3Q9BZS1 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC17.57■□□□□ 0.4
FOXP3Q9BZS1 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC17.57■□□□□ 0.4
FOXP3Q9BZS1 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
FOXP3Q9BZS1 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
FOXP3Q9BZS1 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
FOXP3Q9BZS1 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC17.56■□□□□ 0.4
FOXP3Q9BZS1 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
FOXP3Q9BZS1 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC17.56■□□□□ 0.4
FOXP3Q9BZS1 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC17.56■□□□□ 0.4
FOXP3Q9BZS1 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
FOXP3Q9BZS1 AC046158.3-201ENST00000624947 2558 ntBASIC17.56■□□□□ 0.4
FOXP3Q9BZS1 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC17.56■□□□□ 0.4
FOXP3Q9BZS1 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
FOXP3Q9BZS1 CROCCP1-201ENST00000426910 5675 ntBASIC17.56■□□□□ 0.4
FOXP3Q9BZS1 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC17.56■□□□□ 0.4
FOXP3Q9BZS1 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
FOXP3Q9BZS1 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC17.56■□□□□ 0.4
FOXP3Q9BZS1 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC17.56■□□□□ 0.4
FOXP3Q9BZS1 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
FOXP3Q9BZS1 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
FOXP3Q9BZS1 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
FOXP3Q9BZS1 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
FOXP3Q9BZS1 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
FOXP3Q9BZS1 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC17.56■□□□□ 0.4
FOXP3Q9BZS1 LSM5-204ENST00000409909 740 ntTSL 2 BASIC17.56■□□□□ 0.4
FOXP3Q9BZS1 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC17.56■□□□□ 0.4
FOXP3Q9BZS1 SAPCD2P3-201ENST00000455031 850 ntBASIC17.56■□□□□ 0.4
FOXP3Q9BZS1 CDV3-207ENST00000508481 661 ntTSL 3 BASIC17.56■□□□□ 0.4
FOXP3Q9BZS1 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC17.56■□□□□ 0.4
FOXP3Q9BZS1 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC17.56■□□□□ 0.4
FOXP3Q9BZS1 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC17.56■□□□□ 0.4
FOXP3Q9BZS1 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
FOXP3Q9BZS1 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC17.56■□□□□ 0.4
FOXP3Q9BZS1 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
FOXP3Q9BZS1 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
FOXP3Q9BZS1 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
FOXP3Q9BZS1 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
FOXP3Q9BZS1 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
FOXP3Q9BZS1 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC17.56■□□□□ 0.4
FOXP3Q9BZS1 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
FOXP3Q9BZS1 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC17.56■□□□□ 0.4
FOXP3Q9BZS1 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
FOXP3Q9BZS1 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
FOXP3Q9BZS1 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.56■□□□□ 0.4
FOXP3Q9BZS1 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
FOXP3Q9BZS1 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
FOXP3Q9BZS1 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
FOXP3Q9BZS1 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
FOXP3Q9BZS1 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC17.56■□□□□ 0.4
FOXP3Q9BZS1 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
FOXP3Q9BZS1 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
FOXP3Q9BZS1 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
FOXP3Q9BZS1 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
FOXP3Q9BZS1 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.55■□□□□ 0.4
FOXP3Q9BZS1 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
FOXP3Q9BZS1 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
FOXP3Q9BZS1 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
FOXP3Q9BZS1 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
FOXP3Q9BZS1 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
FOXP3Q9BZS1 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
FOXP3Q9BZS1 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
FOXP3Q9BZS1 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms