Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC16.58■□□□□ 0.24
VPS13AQ96RL7 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VPS13AQ96RL7 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
VPS13AQ96RL7 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
VPS13AQ96RL7 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC16.58■□□□□ 0.24
VPS13AQ96RL7 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC16.58■□□□□ 0.24
VPS13AQ96RL7 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VPS13AQ96RL7 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC16.58■□□□□ 0.24
VPS13AQ96RL7 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC16.58■□□□□ 0.24
VPS13AQ96RL7 AC104989.1-201ENST00000519711 778 ntBASIC16.58■□□□□ 0.24
VPS13AQ96RL7 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VPS13AQ96RL7 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VPS13AQ96RL7 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VPS13AQ96RL7 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
VPS13AQ96RL7 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC16.58■□□□□ 0.24
VPS13AQ96RL7 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
VPS13AQ96RL7 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VPS13AQ96RL7 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC16.58■□□□□ 0.24
VPS13AQ96RL7 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
VPS13AQ96RL7 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.57■□□□□ 0.24
VPS13AQ96RL7 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS13AQ96RL7 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC16.57■□□□□ 0.24
VPS13AQ96RL7 BRWD1P1-201ENST00000401091 371 ntBASIC16.57■□□□□ 0.24
VPS13AQ96RL7 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
VPS13AQ96RL7 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC16.57■□□□□ 0.24
VPS13AQ96RL7 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC16.57■□□□□ 0.24
VPS13AQ96RL7 AC073389.1-201ENST00000595595 795 ntBASIC16.57■□□□□ 0.24
VPS13AQ96RL7 AC243960.2-201ENST00000600996 747 ntBASIC16.57■□□□□ 0.24
VPS13AQ96RL7 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC16.57■□□□□ 0.24
VPS13AQ96RL7 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS13AQ96RL7 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
VPS13AQ96RL7 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC16.57■□□□□ 0.24
VPS13AQ96RL7 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC16.57■□□□□ 0.24
VPS13AQ96RL7 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
VPS13AQ96RL7 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC16.57■□□□□ 0.24
VPS13AQ96RL7 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS13AQ96RL7 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC16.57■□□□□ 0.24
VPS13AQ96RL7 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS13AQ96RL7 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
VPS13AQ96RL7 AC015936.2-201ENST00000593177 259 ntBASIC16.57■□□□□ 0.24
VPS13AQ96RL7 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC16.57■□□□□ 0.24
VPS13AQ96RL7 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS13AQ96RL7 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
VPS13AQ96RL7 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS13AQ96RL7 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
VPS13AQ96RL7 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC16.57■□□□□ 0.24
VPS13AQ96RL7 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
VPS13AQ96RL7 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS13AQ96RL7 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC16.57■□□□□ 0.24
VPS13AQ96RL7 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS13AQ96RL7 AC131009.4-201ENST00000624048 1740 ntBASIC16.57■□□□□ 0.24
VPS13AQ96RL7 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC16.57■□□□□ 0.24
VPS13AQ96RL7 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC16.57■□□□□ 0.24
VPS13AQ96RL7 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC16.57■□□□□ 0.24
VPS13AQ96RL7 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC16.57■□□□□ 0.24
VPS13AQ96RL7 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC16.56■□□□□ 0.24
VPS13AQ96RL7 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VPS13AQ96RL7 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS13AQ96RL7 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC16.56■□□□□ 0.24
VPS13AQ96RL7 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC16.56■□□□□ 0.24
VPS13AQ96RL7 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS13AQ96RL7 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VPS13AQ96RL7 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
VPS13AQ96RL7 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS13AQ96RL7 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS13AQ96RL7 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
VPS13AQ96RL7 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VPS13AQ96RL7 MTND6P24-201ENST00000440466 518 ntBASIC16.56■□□□□ 0.24
VPS13AQ96RL7 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
VPS13AQ96RL7 MTRF1LP2-201ENST00000506027 1122 ntBASIC16.56■□□□□ 0.24
VPS13AQ96RL7 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VPS13AQ96RL7 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
VPS13AQ96RL7 AC073439.1-201ENST00000624121 1774 ntBASIC16.56■□□□□ 0.24
VPS13AQ96RL7 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS13AQ96RL7 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS13AQ96RL7 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS13AQ96RL7 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
VPS13AQ96RL7 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC16.56■□□□□ 0.24
VPS13AQ96RL7 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC16.56■□□□□ 0.24
VPS13AQ96RL7 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
VPS13AQ96RL7 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS13AQ96RL7 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
VPS13AQ96RL7 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS13AQ96RL7 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC16.55■□□□□ 0.24
VPS13AQ96RL7 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS13AQ96RL7 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VPS13AQ96RL7 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC16.55■□□□□ 0.24
VPS13AQ96RL7 RNA5SP412-201ENST00000516234 123 ntBASIC16.55■□□□□ 0.24
VPS13AQ96RL7 MIR8072-201ENST00000614241 80 ntBASIC16.55■□□□□ 0.24
VPS13AQ96RL7 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC16.55■□□□□ 0.24
VPS13AQ96RL7 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VPS13AQ96RL7 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS13AQ96RL7 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC16.55■□□□□ 0.24
VPS13AQ96RL7 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VPS13AQ96RL7 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS13AQ96RL7 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VPS13AQ96RL7 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
VPS13AQ96RL7 GOLGA2P4-201ENST00000441462 777 ntBASIC16.55■□□□□ 0.24
VPS13AQ96RL7 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC16.55■□□□□ 0.24
VPS13AQ96RL7 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms