Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC23.65■■□□□ 1.38
USP47Q96K76 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
USP47Q96K76 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
USP47Q96K76 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
USP47Q96K76 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC23.65■■□□□ 1.38
USP47Q96K76 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
USP47Q96K76 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
USP47Q96K76 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC23.65■■□□□ 1.38
USP47Q96K76 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
USP47Q96K76 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC23.65■■□□□ 1.38
USP47Q96K76 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
USP47Q96K76 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC23.65■■□□□ 1.38
USP47Q96K76 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC23.65■■□□□ 1.38
USP47Q96K76 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
USP47Q96K76 ADH5P3-201ENST00000433842 1137 ntBASIC23.65■■□□□ 1.38
USP47Q96K76 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
USP47Q96K76 FIS1-203ENST00000442303 631 ntTSL 3 BASIC23.65■■□□□ 1.38
USP47Q96K76 AP002490.2-201ENST00000524791 560 ntBASIC23.65■■□□□ 1.38
USP47Q96K76 AP002472.1-201ENST00000577490 586 ntBASIC23.65■■□□□ 1.38
USP47Q96K76 AL031055.1-201ENST00000606362 631 ntBASIC23.65■■□□□ 1.38
USP47Q96K76 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
USP47Q96K76 AC099522.2-201ENST00000607001 744 ntBASIC23.65■■□□□ 1.38
USP47Q96K76 AC106886.4-201ENST00000623557 2502 ntBASIC23.65■■□□□ 1.38
USP47Q96K76 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC23.65■■□□□ 1.38
USP47Q96K76 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
USP47Q96K76 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC23.64■■□□□ 1.38
USP47Q96K76 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC23.64■■□□□ 1.37
USP47Q96K76 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
USP47Q96K76 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
USP47Q96K76 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
USP47Q96K76 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC23.64■■□□□ 1.37
USP47Q96K76 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
USP47Q96K76 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
USP47Q96K76 CDK2AP2P3-201ENST00000422476 372 ntBASIC23.64■■□□□ 1.37
USP47Q96K76 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC23.64■■□□□ 1.37
USP47Q96K76 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC23.64■■□□□ 1.37
USP47Q96K76 MIR3909-201ENST00000579518 119 ntBASIC23.64■■□□□ 1.37
USP47Q96K76 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.37
USP47Q96K76 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.37
USP47Q96K76 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
USP47Q96K76 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
USP47Q96K76 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
USP47Q96K76 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
USP47Q96K76 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
USP47Q96K76 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
USP47Q96K76 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
USP47Q96K76 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC23.63■■□□□ 1.37
USP47Q96K76 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC23.63■■□□□ 1.37
USP47Q96K76 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
USP47Q96K76 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
USP47Q96K76 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC23.63■■□□□ 1.37
USP47Q96K76 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
USP47Q96K76 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
USP47Q96K76 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
USP47Q96K76 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
USP47Q96K76 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC23.63■■□□□ 1.37
USP47Q96K76 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC23.63■■□□□ 1.37
USP47Q96K76 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC23.63■■□□□ 1.37
USP47Q96K76 AC055717.3-201ENST00000622967 595 ntBASIC23.63■■□□□ 1.37
USP47Q96K76 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
USP47Q96K76 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC23.63■■□□□ 1.37
USP47Q96K76 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
USP47Q96K76 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
USP47Q96K76 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
USP47Q96K76 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC23.62■■□□□ 1.37
USP47Q96K76 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC23.62■■□□□ 1.37
USP47Q96K76 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
USP47Q96K76 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC23.62■■□□□ 1.37
USP47Q96K76 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC23.62■■□□□ 1.37
USP47Q96K76 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
USP47Q96K76 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
USP47Q96K76 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
USP47Q96K76 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
USP47Q96K76 LTB4R2-202ENST00000528054 3092 ntBASIC23.62■■□□□ 1.37
USP47Q96K76 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC23.62■■□□□ 1.37
USP47Q96K76 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC23.62■■□□□ 1.37
USP47Q96K76 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC23.62■■□□□ 1.37
USP47Q96K76 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC23.62■■□□□ 1.37
USP47Q96K76 RPSAP43-201ENST00000402237 625 ntBASIC23.62■■□□□ 1.37
USP47Q96K76 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
USP47Q96K76 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC23.62■■□□□ 1.37
USP47Q96K76 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC23.62■■□□□ 1.37
USP47Q96K76 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
USP47Q96K76 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC23.61■■□□□ 1.37
USP47Q96K76 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
USP47Q96K76 AD000864.1-201ENST00000624076 2295 ntBASIC23.61■■□□□ 1.37
USP47Q96K76 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
USP47Q96K76 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
USP47Q96K76 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC23.61■■□□□ 1.37
USP47Q96K76 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC23.61■■□□□ 1.37
USP47Q96K76 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
USP47Q96K76 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC23.61■■□□□ 1.37
USP47Q96K76 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC23.61■■□□□ 1.37
USP47Q96K76 AC109635.5-201ENST00000533593 962 ntBASIC23.61■■□□□ 1.37
USP47Q96K76 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC23.61■■□□□ 1.37
USP47Q96K76 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC23.61■■□□□ 1.37
USP47Q96K76 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC23.61■■□□□ 1.37
USP47Q96K76 AL009183.1-201ENST00000603760 355 ntBASIC23.61■■□□□ 1.37
USP47Q96K76 AC092902.6-201ENST00000641783 218 ntBASIC23.61■■□□□ 1.37
USP47Q96K76 AL139011.1-202ENST00000642063 584 ntBASIC23.61■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms