Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC21.14■□□□□ 0.97
RC3H1Q5TC82 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC21.14■□□□□ 0.97
RC3H1Q5TC82 WDR53-204ENST00000433160 887 ntTSL 5 BASIC21.14■□□□□ 0.97
RC3H1Q5TC82 GNAQP1-201ENST00000444815 1067 ntBASIC21.14■□□□□ 0.97
RC3H1Q5TC82 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC21.14■□□□□ 0.97
RC3H1Q5TC82 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC21.14■□□□□ 0.97
RC3H1Q5TC82 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
RC3H1Q5TC82 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC21.14■□□□□ 0.97
RC3H1Q5TC82 AL162274.1-201ENST00000617191 1098 ntBASIC21.14■□□□□ 0.97
RC3H1Q5TC82 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC21.14■□□□□ 0.97
RC3H1Q5TC82 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
RC3H1Q5TC82 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC21.14■□□□□ 0.97
RC3H1Q5TC82 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
RC3H1Q5TC82 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
RC3H1Q5TC82 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
RC3H1Q5TC82 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
RC3H1Q5TC82 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC21.13■□□□□ 0.97
RC3H1Q5TC82 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC21.13■□□□□ 0.97
RC3H1Q5TC82 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
RC3H1Q5TC82 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC21.13■□□□□ 0.97
RC3H1Q5TC82 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC21.13■□□□□ 0.97
RC3H1Q5TC82 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RC3H1Q5TC82 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
RC3H1Q5TC82 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC21.13■□□□□ 0.97
RC3H1Q5TC82 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
RC3H1Q5TC82 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
RC3H1Q5TC82 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RC3H1Q5TC82 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
RC3H1Q5TC82 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
RC3H1Q5TC82 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RC3H1Q5TC82 AC087499.6-201ENST00000411576 835 ntBASIC21.13■□□□□ 0.97
RC3H1Q5TC82 INE1-201ENST00000456273 945 ntBASIC21.13■□□□□ 0.97
RC3H1Q5TC82 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC21.13■□□□□ 0.97
RC3H1Q5TC82 HILS1-202ENST00000545329 423 ntBASIC21.13■□□□□ 0.97
RC3H1Q5TC82 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC21.13■□□□□ 0.97
RC3H1Q5TC82 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC21.13■□□□□ 0.97
RC3H1Q5TC82 SIGLEC29P-201ENST00000599873 1114 ntBASIC21.13■□□□□ 0.97
RC3H1Q5TC82 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC21.13■□□□□ 0.97
RC3H1Q5TC82 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RC3H1Q5TC82 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC21.13■□□□□ 0.97
RC3H1Q5TC82 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RC3H1Q5TC82 GOLGA2P9-201ENST00000596977 1937 ntBASIC21.13■□□□□ 0.97
RC3H1Q5TC82 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
RC3H1Q5TC82 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RC3H1Q5TC82 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC21.12■□□□□ 0.97
RC3H1Q5TC82 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC21.12■□□□□ 0.97
RC3H1Q5TC82 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RC3H1Q5TC82 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RC3H1Q5TC82 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
RC3H1Q5TC82 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC21.12■□□□□ 0.97
RC3H1Q5TC82 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
RC3H1Q5TC82 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
RC3H1Q5TC82 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
RC3H1Q5TC82 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC21.12■□□□□ 0.97
RC3H1Q5TC82 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC21.12■□□□□ 0.97
RC3H1Q5TC82 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC21.12■□□□□ 0.97
RC3H1Q5TC82 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC21.12■□□□□ 0.97
RC3H1Q5TC82 QPRT-203ENST00000562473 579 ntTSL 3 BASIC21.12■□□□□ 0.97
RC3H1Q5TC82 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC21.12■□□□□ 0.97
RC3H1Q5TC82 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC21.12■□□□□ 0.97
RC3H1Q5TC82 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
RC3H1Q5TC82 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
RC3H1Q5TC82 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RC3H1Q5TC82 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
RC3H1Q5TC82 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
RC3H1Q5TC82 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RC3H1Q5TC82 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RC3H1Q5TC82 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RC3H1Q5TC82 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
RC3H1Q5TC82 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC21.11■□□□□ 0.97
RC3H1Q5TC82 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC21.11■□□□□ 0.97
RC3H1Q5TC82 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RC3H1Q5TC82 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC21.11■□□□□ 0.97
RC3H1Q5TC82 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
RC3H1Q5TC82 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RC3H1Q5TC82 TPR-209ENST00000613151 2478 ntTSL 5 BASIC21.11■□□□□ 0.97
RC3H1Q5TC82 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RC3H1Q5TC82 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
RC3H1Q5TC82 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RC3H1Q5TC82 AC079776.1-201ENST00000401540 1152 ntBASIC21.11■□□□□ 0.97
RC3H1Q5TC82 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RC3H1Q5TC82 POLE2-203ENST00000553805 496 ntTSL 2 BASIC21.11■□□□□ 0.97
RC3H1Q5TC82 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC21.11■□□□□ 0.97
RC3H1Q5TC82 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC21.11■□□□□ 0.97
RC3H1Q5TC82 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC21.11■□□□□ 0.97
RC3H1Q5TC82 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RC3H1Q5TC82 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
RC3H1Q5TC82 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
RC3H1Q5TC82 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RC3H1Q5TC82 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RC3H1Q5TC82 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC21.11■□□□□ 0.97
RC3H1Q5TC82 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC21.11■□□□□ 0.97
RC3H1Q5TC82 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
RC3H1Q5TC82 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
RC3H1Q5TC82 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RC3H1Q5TC82 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC21.1■□□□□ 0.97
RC3H1Q5TC82 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RC3H1Q5TC82 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
RC3H1Q5TC82 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC21.1■□□□□ 0.97
RC3H1Q5TC82 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms