Protein–RNA interactions for Protein: P58304

VSX2, Visual system homeobox 2, humanhuman

Predicted RBP Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX2P58304 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
VSX2P58304 IGLL3P-201ENST00000412472 434 ntBASIC16.27■□□□□ 0.2
VSX2P58304 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC16.27■□□□□ 0.2
VSX2P58304 NMU-202ENST00000505262 693 ntTSL 3 BASIC16.27■□□□□ 0.2
VSX2P58304 PGAM5P1-201ENST00000518923 814 ntBASIC16.27■□□□□ 0.2
VSX2P58304 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC16.27■□□□□ 0.2
VSX2P58304 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC16.27■□□□□ 0.2
VSX2P58304 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC16.27■□□□□ 0.2
VSX2P58304 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC16.27■□□□□ 0.2
VSX2P58304 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC16.27■□□□□ 0.2
VSX2P58304 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC16.27■□□□□ 0.2
VSX2P58304 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC16.27■□□□□ 0.2
VSX2P58304 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
VSX2P58304 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC16.27■□□□□ 0.2
VSX2P58304 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
VSX2P58304 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
VSX2P58304 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
VSX2P58304 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.27■□□□□ 0.19
VSX2P58304 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.27■□□□□ 0.19
VSX2P58304 LINC02012-201ENST00000608206 1725 ntBASIC16.27■□□□□ 0.19
VSX2P58304 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
VSX2P58304 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
VSX2P58304 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
VSX2P58304 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
VSX2P58304 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
VSX2P58304 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
VSX2P58304 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
VSX2P58304 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
VSX2P58304 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
VSX2P58304 AL139384.1-201ENST00000612143 3047 ntBASIC16.27■□□□□ 0.19
VSX2P58304 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VSX2P58304 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VSX2P58304 AC002310.6-201ENST00000624451 1377 ntBASIC16.26■□□□□ 0.19
VSX2P58304 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VSX2P58304 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VSX2P58304 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VSX2P58304 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC16.26■□□□□ 0.19
VSX2P58304 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VSX2P58304 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VSX2P58304 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VSX2P58304 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VSX2P58304 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VSX2P58304 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
VSX2P58304 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VSX2P58304 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
VSX2P58304 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
VSX2P58304 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VSX2P58304 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VSX2P58304 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VSX2P58304 RHBDF1P1-201ENST00000427504 1941 ntBASIC16.26■□□□□ 0.19
VSX2P58304 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VSX2P58304 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VSX2P58304 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
VSX2P58304 AC023274.1-201ENST00000418278 595 ntBASIC16.26■□□□□ 0.19
VSX2P58304 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
VSX2P58304 MAL2-202ENST00000531508 892 ntTSL 3 BASIC16.26■□□□□ 0.19
VSX2P58304 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC16.26■□□□□ 0.19
VSX2P58304 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VSX2P58304 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VSX2P58304 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VSX2P58304 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
VSX2P58304 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VSX2P58304 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
VSX2P58304 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VSX2P58304 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VSX2P58304 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VSX2P58304 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC16.26■□□□□ 0.19
VSX2P58304 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC16.26■□□□□ 0.19
VSX2P58304 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC16.26■□□□□ 0.19
VSX2P58304 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC16.26■□□□□ 0.19
VSX2P58304 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
VSX2P58304 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VSX2P58304 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VSX2P58304 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
VSX2P58304 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC16.25■□□□□ 0.19
VSX2P58304 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
VSX2P58304 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
VSX2P58304 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VSX2P58304 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC16.25■□□□□ 0.19
VSX2P58304 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC16.25■□□□□ 0.19
VSX2P58304 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VSX2P58304 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VSX2P58304 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
VSX2P58304 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC16.25■□□□□ 0.19
VSX2P58304 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VSX2P58304 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
VSX2P58304 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC16.25■□□□□ 0.19
VSX2P58304 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC16.25■□□□□ 0.19
VSX2P58304 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC16.25■□□□□ 0.19
VSX2P58304 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC16.25■□□□□ 0.19
VSX2P58304 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC16.25■□□□□ 0.19
VSX2P58304 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC16.25■□□□□ 0.19
VSX2P58304 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC16.25■□□□□ 0.19
VSX2P58304 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC16.25■□□□□ 0.19
VSX2P58304 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VSX2P58304 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VSX2P58304 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC16.25■□□□□ 0.19
VSX2P58304 AC010507.1-201ENST00000633895 436 ntBASIC16.25■□□□□ 0.19
VSX2P58304 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
VSX2P58304 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms