Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LDLRP01130 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
LDLRP01130 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
LDLRP01130 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
LDLRP01130 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC16.49■□□□□ 0.23
LDLRP01130 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC16.49■□□□□ 0.23
LDLRP01130 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC16.49■□□□□ 0.23
LDLRP01130 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC16.49■□□□□ 0.23
LDLRP01130 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC16.49■□□□□ 0.23
LDLRP01130 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
LDLRP01130 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
LDLRP01130 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC16.49■□□□□ 0.23
LDLRP01130 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
LDLRP01130 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
LDLRP01130 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC16.49■□□□□ 0.23
LDLRP01130 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LDLRP01130 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LDLRP01130 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LDLRP01130 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LDLRP01130 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
LDLRP01130 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LDLRP01130 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
LDLRP01130 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
LDLRP01130 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
LDLRP01130 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
LDLRP01130 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
LDLRP01130 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC16.49■□□□□ 0.23
LDLRP01130 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
LDLRP01130 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC16.49■□□□□ 0.23
LDLRP01130 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
LDLRP01130 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC16.49■□□□□ 0.23
LDLRP01130 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
LDLRP01130 AC093909.1-201ENST00000504731 1122 ntBASIC16.49■□□□□ 0.23
LDLRP01130 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
LDLRP01130 AL592071.1-201ENST00000611956 408 ntBASIC16.49■□□□□ 0.23
LDLRP01130 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
LDLRP01130 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC16.49■□□□□ 0.23
LDLRP01130 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
LDLRP01130 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LDLRP01130 WT1-209ENST00000530998 2421 ntTSL 2 BASIC16.49■□□□□ 0.23
LDLRP01130 LYSMD4-203ENST00000378904 2122 ntBASIC16.49■□□□□ 0.23
LDLRP01130 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC16.49■□□□□ 0.23
LDLRP01130 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
LDLRP01130 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LDLRP01130 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LDLRP01130 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC16.49■□□□□ 0.23
LDLRP01130 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
LDLRP01130 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LDLRP01130 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC16.48■□□□□ 0.23
LDLRP01130 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
LDLRP01130 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
LDLRP01130 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LDLRP01130 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC16.48■□□□□ 0.23
LDLRP01130 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
LDLRP01130 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LDLRP01130 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
LDLRP01130 NFIC-211ENST00000641145 8399 ntBASIC16.48■□□□□ 0.23
LDLRP01130 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LDLRP01130 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC16.48■□□□□ 0.23
LDLRP01130 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
LDLRP01130 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LDLRP01130 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
LDLRP01130 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
LDLRP01130 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC16.48■□□□□ 0.23
LDLRP01130 HMGN1P19-201ENST00000436976 333 ntBASIC16.48■□□□□ 0.23
LDLRP01130 VENTXP7-201ENST00000475503 772 ntBASIC16.48■□□□□ 0.23
LDLRP01130 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC16.48■□□□□ 0.23
LDLRP01130 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC16.48■□□□□ 0.23
LDLRP01130 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC16.48■□□□□ 0.23
LDLRP01130 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC16.48■□□□□ 0.23
LDLRP01130 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC16.48■□□□□ 0.23
LDLRP01130 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC16.48■□□□□ 0.23
LDLRP01130 HOTTIP_1.1-201ENST00000620415 57 ntBASIC16.48■□□□□ 0.23
LDLRP01130 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
LDLRP01130 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC16.48■□□□□ 0.23
LDLRP01130 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LDLRP01130 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
LDLRP01130 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LDLRP01130 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC16.48■□□□□ 0.23
LDLRP01130 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LDLRP01130 PCDHA1-201ENST00000378133 2726 ntBASIC16.48■□□□□ 0.23
LDLRP01130 LINC02199-201ENST00000506655 2702 ntBASIC16.48■□□□□ 0.23
LDLRP01130 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC16.48■□□□□ 0.23
LDLRP01130 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC16.48■□□□□ 0.23
LDLRP01130 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LDLRP01130 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
LDLRP01130 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC16.48■□□□□ 0.23
LDLRP01130 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC16.48■□□□□ 0.23
LDLRP01130 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LDLRP01130 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LDLRP01130 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC16.48■□□□□ 0.23
LDLRP01130 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC16.48■□□□□ 0.23
LDLRP01130 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
LDLRP01130 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LDLRP01130 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LDLRP01130 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC16.47■□□□□ 0.23
LDLRP01130 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LDLRP01130 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LDLRP01130 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LDLRP01130 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 68.2 ms